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DNA binding protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820401, updated on 18-Sep-2024

Summary

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Official Full Name
DNA binding protein
Primary source
TAIR:AT3G12210
Locus tag
AT3G12210
See related
Araport:AT3G12210
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
4
Sequence:
Chromosome: 3; NC_003074.8 (3894753..3896567)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene golgin family A protein Neighboring gene NIMA-related kinase 7 Neighboring gene serine carboxypeptidase-like 17 Neighboring gene serine carboxypeptidase-like 16 Neighboring gene serine carboxypeptidase-like 14 Neighboring gene serine carboxypeptidase-like 15

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Telomerase Interaction Partners-Insight from Plants. Fulnečková J, et al. Int J Mol Sci, 2021 Dec 29. PMID 35008793, Free PMC Article
  2. Tandem affinity purification of AtTERT reveals putative interaction partners of plant telomerase in vivo. Majerská J, et al. Protoplasma, 2017 Jul. PMID 27853871
  3. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
  4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_112057.3
NM_180238.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
DNA binding protein
NP_566413.1
  • DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: DNA repair; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583); Has 226 Blast hits to 226 proteins in 103 species: Archae - 3; Bacteria - 2; Metazoa - 90; Fungi - 78; Plants - 41; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
NP_850569.1
  • DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: DNA repair; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583); Has 220 Blast hits to 220 proteins in 100 species: Archae - 3; Bacteria - 2; Metazoa - 90; Fungi - 77; Plants - 38; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    3894753..3896567
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112057.3 → NP_566413.1  DNA binding protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566413.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V712, A0A384LKH6, Q9C7D5

  2. NM_180238.2 → NP_850569.1  DNA binding protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850569.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q94K65
Nucleotide Protein
Heading Accession and Version

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