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DRT100 Leucine-rich repeat (LRR) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820441, updated on 7-Sep-2023

Summary

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Gene symbol
DRT100
Gene description
Leucine-rich repeat (LRR) family protein
Primary source
Araport:AT3G12610
Locus tag
AT3G12610
See related
TAIR:AT3G12610
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
DNA-DAMAGE REPAIR/TOLERATION 100
Summary
Plays role in DNA-damage repair/toleration. Partially complements RecA- phenotypes.
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Genomic context

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See DRT100 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
1
Sequence:
Chromosome: 3; NC_003074.8 (4006346..4008018, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Oligosaccaryltransferase Neighboring gene uncharacterized protein Neighboring gene nudix hydrolase homolog 16 Neighboring gene Protein phosphatase 2C family protein Neighboring gene A20/AN1-like zinc finger family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A plant cDNA that partially complements Escherichia coli recA mutations predicts a polypeptide not strongly homologous to RecA proteins. Pang Q, et al. Proc Natl Acad Sci U S A, 1992 Sep 1. PMID 1518832, Free PMC Article
  2. A homolog of Escherichia coli RecA protein in plastids of higher plants. Cerutti H, et al. Proc Natl Acad Sci U S A, 1992 Sep 1. PMID 1518831, Free PMC Article
  3. The leucine-rich repeat as a protein recognition motif. Kobe B, et al. Curr Opin Struct Biol, 2001 Dec. PMID 11751054
  4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_112096.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables nucleotide binding ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within UV protection IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within response to UV IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within signal transduction IC
Inferred by Curator
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Leucine-rich repeat (LRR) family protein
NP_187867.1
  • DNA-DAMAGE REPAIR/TOLERATION 100 (DRT100); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT3G20820.1); Has 34126 Blast hits to 33731 proteins in 4830 species: Archae - 159; Bacteria - 16481; Metazoa - 3906; Fungi - 1752; Plants - 1258; Viruses - 310; Other Eukaryotes - 10260 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    4006346..4008018 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112096.3 → NP_187867.1  Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_187867.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q00874, Q9LHK0
    UniProtKB/TrEMBL
    A0A178VMS3, A0A5S9XBF6
    Conserved Domains (2) summary
    PLN00113
    Location:25 → 344
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    sd00033
    Location:112 → 136
    LRR_RI; leucine-rich repeat [structural motif]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q00874.2

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