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COBL1 COBRA-like protein 1 precursor [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821245, updated on 18-Sep-2024

Summary

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Official Symbol
COBL1
Official Full Name
COBRA-like protein 1 precursor
Primary source
TAIR:AT3G02210
Locus tag
AT3G02210
See related
Araport:AT3G02210
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
COBRA-like protein 1 precursor; F14P3.14; F14P3_14
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Genomic context

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See COBL1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
6
Sequence:
Chromosome: 3; NC_003074.8 (409193..411873, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene SPIRAL1-like3 Neighboring gene Ribosomal protein L39 family protein Neighboring gene Proteasome component (PCI) domain protein Neighboring gene small acidic-like protein Neighboring gene reversibly glycosylated polypeptide 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Changes in gene expression in Arabidopsis shoots during phosphate starvation and the potential for developing smart plants. Hammond JP, et al. Plant Physiol, 2003 Jun. PMID 12805589, Free PMC Article
  2. The COBRA family of putative GPI-anchored proteins in Arabidopsis. A new fellowship in expansion. Roudier F, et al. Plant Physiol, 2002 Oct. PMID 12376623, Free PMC Article
  3. Prediction of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A genomic analysis. Borner GH, et al. Plant Physiol, 2002 Jun. PMID 12068095, Free PMC Article
  4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_111088.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in cellulose microfibril organization IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane TAS
Traceable Author Statement
more info
 PubMed 
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
COBRA-like protein 1 precursor
NP_186870.1
  • COBRA-like protein 1 precursor (COBL1); CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored, plant (InterPro:IPR006918), COBRA-like (InterPro:IPR017391); BEST Arabidopsis thaliana protein match is: COBRA-like protein 2 precursor (TAIR:AT3G29810.1); Has 380 Blast hits to 369 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 380; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    409193..411873 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_111088.4 → NP_186870.1  COBRA-like protein 1 precursor [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_186870.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SRT7
    UniProtKB/TrEMBL
    A0A178VHK7, A0A5S9X8G4
    Conserved Domains (1) summary
    pfam04833
    Location:57 → 220
    COBRA; COBRA-like protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SRT7.1

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