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heat-inducible transcription repressor (DUF639) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821364, updated on 18-Sep-2024

Summary

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Official Full Name
heat-inducible transcription repressor (DUF639)
Primary source
TAIR:AT3G18350
Locus tag
AT3G18350
See related
Araport:AT3G18350
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
10
Sequence:
Chromosome: 3; NC_003074.8 (6296677..6300673)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene ncRNA Neighboring gene VQ motif-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene C2 domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713
  2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

GeneRIFs: Gene References Into Functions

General gene information

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Markers

NM_112720.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
heat-inducible transcription repressor (DUF639)
NP_566606.1
  • Plant protein of unknown function (DUF639); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF639 (InterPro:IPR006927); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF639) (TAIR:AT1G48840.1); Has 149 Blast hits to 146 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 149; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    6296677..6300673
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001338335.1 → NP_001325778.1  heat-inducible transcription repressor (DUF639) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VJF7, A0A384K8Q6, A0A5S9XDN7, Q9LS55
    Conserved Domains (1) summary
    pfam04842
    Location:458 → 684
    DUF639; Plant protein of unknown function (DUF639)

  2. NM_001338336.1 → NP_001325777.1  heat-inducible transcription repressor (DUF639) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VJF7, A0A384K8Q6, A0A5S9XDN7, Q9LS55
    Conserved Domains (1) summary
    pfam04842
    Location:458 → 684
    DUF639; Plant protein of unknown function (DUF639)

  3. NM_112720.2 → NP_566606.1  heat-inducible transcription repressor (DUF639) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566606.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VJF7, A0A384K8Q6, A0A5S9XDN7, Q9LS55
    Conserved Domains (1) summary
    pfam04842
    Location:458 → 684
    DUF639; Plant protein of unknown function (DUF639)
Nucleotide Protein
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