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ATSYTF C2 domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821366, updated on 18-Sep-2024

Summary

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Official Symbol
ATSYTF
Official Full Name
C2 domain-containing protein
Primary source
TAIR:AT3G18370
Locus tag
AT3G18370
See related
Araport:AT3G18370
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
NTMC2T3; NTMC2TYPE3; SYTF
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Genomic context

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See ATSYTF in Genome Data Viewer
Location:
chromosome: 3
Exon count:
13
Sequence:
Chromosome: 3; NC_003074.8 (6305444..6310684)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene heat-inducible transcription repressor (DUF639) Neighboring gene VQ motif-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene DNA-BINDING TRANSCRIPTION FACTOR 2 Neighboring gene CRS1 / YhbY (CRM) domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713
  3. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

GeneRIFs: Gene References Into Functions

General gene information

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NM_112722.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in endoplasmic reticulum HDA PubMed 

General protein information

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Preferred Names
C2 domain-containing protein
NP_566607.1
  • ATSYTF; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT5G11100.1); Has 5534 Blast hits to 4008 proteins in 246 species: Archae - 0; Bacteria - 0; Metazoa - 3360; Fungi - 437; Plants - 1305; Viruses - 0; Other Eukaryotes - 432 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    6305444..6310684
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112722.3 → NP_566607.1  C2 domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566607.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VHP1, A0A384KVL8, A0A5S9XEU9, A0A654F8E6, Q93ZM0
    Conserved Domains (1) summary
    pfam00168
    Location:605 → 703
    C2; C2 domain
Nucleotide Protein
Heading Accession and Version

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