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BRC1 TCP family transcription factor [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821386, updated on 18-Sep-2024

Summary

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Official Symbol
BRC1
Official Full Name
TCP family transcription factor
Primary source
TAIR:AT3G18550
Locus tag
AT3G18550
See related
Araport:AT3G18550
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtBRC1; ATTCP18; BRANCHED 1; TCP18
Summary
Encodes a TCP transcription factor, closely related to teosinte branched1, arrests axillary bud development and prevents axillary bud outgrowth.
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Genomic context

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See BRC1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Sequence:
Chromosome: 3; NC_003074.8 (6383289..6385815)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ARM repeat superfamily protein Neighboring gene tubulin-tyrosine ligase Neighboring gene ncRNA Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene miscRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A gene regulatory network critical for axillary bud dormancy directly controlled by Arabidopsis BRANCHED1. van Es SW, et al. New Phytol, 2024 Feb. PMID 38009929
  2. Connective auxin transport contributes to strigolactone-mediated shoot branching control independent of the transcription factor BRC1. van Rongen M, et al. PLoS Genet, 2019 Mar. PMID 30865619, Free PMC Article
  3. Phytoplasma effector SWP1 induces witches' broom symptom by destabilizing the TCP transcription factor BRANCHED1. Wang N, et al. Mol Plant Pathol, 2018 Dec. PMID 30047227, Free PMC Article
  4. BRC1 expression regulates bud activation potential but is not necessary or sufficient for bud growth inhibition in Arabidopsis. Seale M, et al. Development, 2017 May 1. PMID 28289131, Free PMC Article
  5. BRANCHED1 promotes axillary bud dormancy in response to shade in Arabidopsis. González-Grandío E, et al. Plant Cell, 2013 Mar. PMID 23524661, Free PMC Article

See all (16) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Class I TCP transcription factors TCP14 and TCP15 promote axillary branching in Arabidopsis by counteracting the action of Class II TCP BRANCHED1.
    Title: Class I TCP transcription factors TCP14 and TCP15 promote axillary branching in Arabidopsis by counteracting the action of Class II TCP BRANCHED1.
  2. A gene regulatory network critical for axillary bud dormancy directly controlled by Arabidopsis BRANCHED1.
    Title: A gene regulatory network critical for axillary bud dormancy directly controlled by Arabidopsis BRANCHED1.
  3. The branchy phenotype of mutants lacking the axillary meristem-expressed transcription factor, BRANCHED1 (BRC1) is unaffected by pin3pin4pin7.
    Title: Connective auxin transport contributes to strigolactone-mediated shoot branching control independent of the transcription factor BRC1.
  4. These findings suggest that the phytoplasma effector SWP1 induces witches' broom symptoms through targeting of BRC1 and promoting its degradation.
    Title: Phytoplasma effector SWP1 induces witches' broom symptom by destabilizing the TCP transcription factor BRANCHED1.
  5. results reveal that TIE1 is an important shoot branching regulator, and provide new insights in the post-transcriptional regulation of the TCP transcription factor BRC1
    Title: The TIE1 transcriptional repressor controls shoot branching by directly repressing BRANCHED1 in Arabidopsis.
  6. a coherent feed-forward loop in which strigolactone treatment reduces the probability of bud activation by parallel effects on BRC1 transcription and the shoot auxin transport network.
    Title: BRC1 expression regulates bud activation potential but is not necessary or sufficient for bud growth inhibition in Arabidopsis.
  7. The Arabidopsis thaliana gene BRANCHED1 (BRC1), expressed in axillary buds, is required for branch suppression in response to shade.
    Title: BRANCHED1 promotes axillary bud dormancy in response to shade in Arabidopsis.
  8. Data indicate that BRANCHED1 (BRC1) interacts with the florigen proteins FLOWERING LOCUS T (FT) and TWIN SISTER OF FT (TSF) but not with TERMINAL FLOWER1, a floral repressor.
    Title: BRANCHED1 interacts with FLOWERING LOCUS T to repress the floral transition of the axillary meristems in Arabidopsis.
  9. BRANCHED1 (BRC1) plays a central role in the control of axillary bud development. BRC1 acts as a local integrator of the genetic pathways controlling branch outgrowth. [BRC1]
    Title: Arabidopsis BRANCHED1 acts as an integrator of branching signals within axillary buds.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001125184.1
NM_001338345.1
NM_112741.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables transcription cis-regulatory region binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of DNA-templated transcription TAS
Traceable Author Statement
more info
 PubMed 
acts_upstream_of_or_within regulation of secondary shoot formation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within secondary shoot formation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in secondary shoot formation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
TCP family transcription factor
NP_001118656.1
  • BRANCHED 1 (BRC1); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of secondary shoot formation, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: axillary bud, axillary bud meristem; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), CYC/TB1, R domain (InterPro:IPR017888), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP domain protein 12 (TAIR:AT1G68800.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_001319582.1
  • BRANCHED 1 (BRC1); CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), CYC/TB1, R domain (InterPro:IPR017888), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP domain protein 12 (TAIR:AT1G68800.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    6383289..6385815
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001338346.1 → NP_001327556.1  TCP family transcription factor [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LSP1, A0A7G2EMY1

  2. NM_001338345.1 → NP_001319582.1  TCP family transcription factor [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0AQW3, A1YKT1, Q9LII4
    UniProtKB/TrEMBL
    A0A654F8H0, A0A7G2EMY1
    Conserved Domains (1) summary
    pfam03634
    Location:146 → 301
    TCP; TCP family transcription factor

  3. NM_001125184.1 → NP_001118656.1  TCP family transcription factor [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001118656.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2EMY1
    Conserved Domains (1) summary
    pfam03634
    Location:147 → 297
    TCP; TCP family transcription factor

  4. NM_112741.3 → NP_188485.2  TCP family transcription factor [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188485.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0AQW3, A1YKT1, Q9LII4
    UniProtKB/TrEMBL
    A0A654F8H0, A0A7G2EMY1
    Conserved Domains (1) summary
    pfam03634
    Location:146 → 301
    TCP; TCP family transcription factor
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A1YKT1.1

Gene LinkOut

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