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Leucine-rich repeat (LRR) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821457, updated on 18-Sep-2024

Summary

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Official Full Name
Leucine-rich repeat (LRR) family protein
Primary source
TAIR:AT3G19230
Locus tag
AT3G19230
See related
Araport:AT3G19230
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
9
Sequence:
Chromosome: 3; NC_003074.8 (6660800..6663558, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene DNA repair/recombination protein Neighboring gene protein disulfide isomerase Neighboring gene tRNA-Arg Neighboring gene Vacuolar import/degradation, Vid27-related protein Neighboring gene transmembrane protein, putative (DUF677)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_112810.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
Leucine-rich repeat (LRR) family protein
NP_188554.1
  • Leucine-rich repeat (LRR) family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT3G05990.1); Has 60731 Blast hits to 14722 proteins in 650 species: Archae - 18; Bacteria - 1872; Metazoa - 1598; Fungi - 177; Plants - 54234; Viruses - 0; Other Eukaryotes - 2832 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    6660800..6663558 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112810.2 → NP_188554.1  Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188554.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VIW9, A0A384KHR1, A0A5S9XDT8, F4JB46
    Conserved Domains (3) summary
    PLN00113
    Location:397 → 498
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    sd00033
    Location:403 → 424
    LRR_RI; leucine-rich repeat [structural motif]
    pfam12819
    Location:25 → 347
    Malectin_like; Carbohydrate-binding protein of the ER
Nucleotide Protein
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