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ckl10 casein kinase I-like 10 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821915, updated on 18-Sep-2024

Summary

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Official Symbol
ckl10
Official Full Name
casein kinase I-like 10
Primary source
TAIR:AT3G23340
Locus tag
AT3G23340
See related
Araport:AT3G23340
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
casein kinase I-like 10
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Genomic context

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See ckl10 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
14
Sequence:
Chromosome: 3; NC_003074.8 (8350803..8354021)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Splicing factor 3B subunit 5/RDS3 complex subunit 10 Neighboring gene ncRNA Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene ENTH/VHS family protein Neighboring gene Protein phosphatase 2C family protein Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Plasmodesmal-associated protein kinase in tobacco and Arabidopsis recognizes a subset of non-cell-autonomous proteins. Lee JY, et al. Plant Cell, 2005 Oct. PMID 16126836, Free PMC Article
  2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001338625.1
NM_113237.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
casein kinase I-like 10
NP_188976.1
  • casein kinase I-like 10 (ckl10); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: casein kinase I (TAIR:AT4G14340.1); Has 56550 Blast hits to 56234 proteins in 2232 species: Archae - 39; Bacteria - 9117; Metazoa - 21673; Fungi - 6267; Plants - 8804; Viruses - 331; Other Eukaryotes - 10319 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    8350803..8354021
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_113237.3 → NP_188976.1  casein kinase I-like 10 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188976.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q39051, Q9LW62
    UniProtKB/TrEMBL
    A0A178VJF4, A0A178VL59, A0A5S9XEX5
    Conserved Domains (1) summary
    cd14125
    Location:8 → 282
    STKc_CK1_delta_epsilon; Catalytic domain of the Serine/Threonine protein kinases, Casein Kinase 1 delta and epsilon

  2. NM_001338625.1 → NP_001326886.1  casein kinase I-like 10 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VJF4, A0A1I9LQM5
    Conserved Domains (1) summary
    cd14125
    Location:7 → 268
    STKc_CK1_delta_epsilon; Catalytic domain of the Serine/Threonine protein kinases, Casein Kinase 1 delta and epsilon
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LW62.1

Gene LinkOut

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