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ING1 RING/FYVE/PHD zinc finger superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821986, updated on 18-Sep-2024

Summary

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Official Symbol
ING1
Official Full Name
RING/FYVE/PHD zinc finger superfamily protein
Primary source
TAIR:AT3G24010
Locus tag
AT3G24010
See related
Araport:AT3G24010
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ARABIDOPSIS THALIANA INHIBITOR OF GROWTH 1; ATING1; INHIBITOR OF GROWTH 1
Summary
ING1 encodes a member of the Inhibitor of Growth family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.
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Genomic context

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See ING1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
7
Sequence:
Chromosome: 3; NC_003074.8 (8675905..8678286, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene miscRNA Neighboring gene Disease resistance-responsive (dirigent-like protein) family protein Neighboring gene ncRNA Neighboring gene hydroxyethylthiazole kinase family protein Neighboring gene Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis ING and Alfin1-like protein families localize to the nucleus and bind to H3K4me3/2 via plant homeodomain fingers. Lee WY, et al. Plant J, 2009 May. PMID 19154204
  2. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
  3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_113306.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables methylated histone binding IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RING/FYVE/PHD zinc finger superfamily protein
NP_566742.1
  • INHIBITOR OF GROWTH 1 (ING1); CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: PHD finger protein-related (TAIR:AT1G54390.3); Has 1560 Blast hits to 1473 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 910; Fungi - 445; Plants - 120; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    8675905..8678286 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_113306.4 → NP_566742.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566742.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q84WD2, Q9LIQ6
    UniProtKB/TrEMBL
    A0A178VK01, A0A5S9XFL9
    Conserved Domains (2) summary
    cd15587
    Location:180 → 225
    PHD_Yng1p_like; PHD finger found in yeast orthologs of ING tumor suppressor family
    cd17015
    Location:11 → 107
    ING_plant; Inhibitor of growth (ING) domain of plant inhibitor of growth proteins
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LIQ6.1

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