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TMKL1 transmembrane kinase-like 1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 822062, updated on 18-Sep-2024

Summary

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Official Symbol
TMKL1
Official Full Name
transmembrane kinase-like 1
Primary source
TAIR:AT3G24660
Locus tag
AT3G24660
See related
Araport:AT3G24660
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
transmembrane kinase-like 1
Summary
member of Receptor kinase-like protein family
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Genomic context

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See TMKL1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_003074.8 (9003569..9005943)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene lyase Neighboring gene AP2/B3-like transcriptional factor family protein Neighboring gene Pectin lyase-like superfamily protein Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A membrane protein/signaling protein interaction network for Arabidopsis version AMPv2. Lalonde S, et al. Front Physiol, 2010. PMID 21423366, Free PMC Article
  2. An extracellular network of Arabidopsis leucine-rich repeat receptor kinases. Smakowska-Luzan E, et al. Nature, 2018 Jan 18. PMID 29320478, Free PMC Article
  3. Mapping the Arabidopsis organelle proteome. Dunkley TP, et al. Proc Natl Acad Sci U S A, 2006 Apr 25. PMID 16618929, Free PMC Article
  4. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
  5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_113377.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables kinase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in plasma membrane HDA PubMed 
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  
located_in plasmodesma HDA PubMed 

General protein information

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Preferred Names
transmembrane kinase-like 1
NP_189109.1
  • transmembrane kinase-like 1 (TMKL1); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: inflorescence meristem receptor-like kinase 2 (TAIR:AT3G51740.1); Has 102882 Blast hits to 72978 proteins in 2721 species: Archae - 76; Bacteria - 8021; Metazoa - 22133; Fungi - 3923; Plants - 58593; Viruses - 201; Other Eukaryotes - 9935 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    9003569..9005943
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_113377.4 → NP_189109.1  transmembrane kinase-like 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_189109.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P33543
    UniProtKB/TrEMBL
    A0A178VB18, A0A7G2ESG6
    Conserved Domains (4) summary
    smart00219
    Location:366 → 649
    TyrKc; Tyrosine kinase, catalytic domain
    sd00033
    Location:125 → 148
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:200 → 258
    LRR_8; Leucine rich repeat
    cl21453
    Location:381 → 651
    PKc_like; Protein Kinases, catalytic domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P33543.1

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