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B3 domain protein (DUF313) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 822083, updated on 18-Sep-2024

Summary

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Official Full Name
B3 domain protein (DUF313)
Primary source
TAIR:AT3G24850
Locus tag
AT3G24850
See related
Araport:AT3G24850
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
1
Sequence:
Chromosome: 3; NC_003074.8 (9071105..9072184)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Ribosomal protein L13 family protein Neighboring gene Sec14p-like phosphatidylinositol transfer family protein Neighboring gene Homeodomain-like superfamily protein Neighboring gene ncRNA Neighboring gene Helicase/SANT-associated, DNA binding protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
B3 domain protein (DUF313)
NP_189129.1
  • FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF313 (InterPro:IPR005508), Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF313) (TAIR:AT5G24050.1); Has 152 Blast hits to 151 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 152; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    9071105..9072184
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_113397.1 → NP_189129.1  B3 domain protein (DUF313) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_189129.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LRX6
    UniProtKB/TrEMBL
    A0A178VBA3
    Conserved Domains (1) summary
    pfam03754
    Location:207 → 323
    DUF313; Domain of unknown function (DUF313)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LRX6.1

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