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RLP42 receptor like protein 42 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 822093, updated on 18-Sep-2024

Summary

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Official Symbol
RLP42
Official Full Name
receptor like protein 42
Primary source
TAIR:AT3G25020
Locus tag
AT3G25020
See related
Araport:AT3G25020
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtRLP42; RBPG1; receptor like protein 42; response to Botrytis polygalacturonases 1
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Genomic context

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See RLP42 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
1
Sequence:
Chromosome: 3; NC_003074.8 (9116684..9119804, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Synaptobrevin family protein Neighboring gene uncharacterized protein Neighboring gene RING/U-box superfamily protein Neighboring gene endoplasmic reticulum retention defective 2B

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Fungal endopolygalacturonases are recognized as microbe-associated molecular patterns by the arabidopsis receptor-like protein RESPONSIVENESS TO BOTRYTIS POLYGALACTURONASES1. Zhang L, et al. Plant Physiol, 2014 Jan. PMID 24259685, Free PMC Article
  2. The leucine-rich repeat as a protein recognition motif. Kobe B, et al. Curr Opin Struct Biol, 2001 Dec. PMID 11751054
  3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. the function of the RLP42 gene (RBPG1) as a receptor for fungal endopolygalacturonases from fungal pathogens
    Title: Fungal endopolygalacturonases are recognized as microbe-associated molecular patterns by the arabidopsis receptor-like protein RESPONSIVENESS TO BOTRYTIS POLYGALACTURONASES1.
Submit: New GeneRIF Correction

General gene information

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NM_113406.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of defense response to fungus IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of defense response to oomycetes IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in response to molecule of fungal origin IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within signal transduction IC
Inferred by Curator
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
receptor like protein 42
NP_189138.1
  • receptor like protein 42 (RLP42); INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 40 (TAIR:AT3G24982.1); Has 101819 Blast hits to 28851 proteins in 1081 species: Archae - 42; Bacteria - 7146; Metazoa - 22681; Fungi - 1243; Plants - 63183; Viruses - 32; Other Eukaryotes - 7492 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    9116684..9119804 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_113406.2 → NP_189138.1  receptor like protein 42 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_189138.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LJS0
    UniProtKB/TrEMBL
    W0JFJ4
    Conserved Domains (2) summary
    sd00033
    Location:172 → 197
    LRR_RI; leucine-rich repeat [structural motif]
    cl26793
    Location:113 → 810
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LJS0.1

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