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TPS-CIN terpene synthase-like sequence-1,8-cineole [ Arabidopsis thaliana (thale cress) ]

Gene ID: 822177, updated on 18-Sep-2024

Summary

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Official Symbol
TPS-CIN
Official Full Name
terpene synthase-like sequence-1,8-cineole
Primary source
TAIR:AT3G25830
Locus tag
AT3G25830
See related
Araport:AT3G25830
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
''terpene synthase-like sequence-1; 8-cineole; 8-cineole''; ATTPS-CIN; terpene synthase-like sequence-1
Summary
Encodes the monoterpene 1,8-cineole synthase, atTPS-Cin. This polypeptide was also shown to synthesize other monoterpenes albeit in minor quantities. The same polypeptide is encoded at two different loci, the result of gene duplication: at3g25820 and at3g25830.
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Genomic context

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See TPS-CIN in Genome Data Viewer
Location:
chromosome: 3
Exon count:
7
Sequence:
Chromosome: 3; NC_003074.8 (9447409..9451037)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene terpene synthase-like sequence-1,8-cineole Neighboring gene pseudo Neighboring gene Protein kinase superfamily protein Neighboring gene Cysteine/Histidine-rich C1 domain family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Susceptibility to Verticillium longisporum is linked to monoterpene production by TPS23/27 in Arabidopsis. Roos J, et al. Plant J, 2015 Feb. PMID 25640950
  2. Characterization of a root-specific Arabidopsis terpene synthase responsible for the formation of the volatile monoterpene 1,8-cineole. Chen F, et al. Plant Physiol, 2004 Aug. PMID 15299125, Free PMC Article
  3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. TPS23/27-produced monoterpenes stimulate germination and subsequent invasion of Verticillium longisporum in Arabidopsis roots.
    Title: Susceptibility to Verticillium longisporum is linked to monoterpene production by TPS23/27 in Arabidopsis.
Submit: New GeneRIF Correction

Pathways from PubChem

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General gene information

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NM_113485.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables (E)-beta-ocimene synthase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables 1,8-cineole synthase activity IEA
Inferred from Electronic Annotation
more info
  
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
  
enables myrcene synthase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables terpene synthase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within defense response to fungus IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in diterpenoid biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within monoterpenoid biosynthetic process IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within root development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
terpene synthase-like sequence-1,8-cineole
NP_189212.1
  • ''terpene synthase-like sequence-1,8-cineole'' (TPS-CIN); CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: terpene synthase-like sequence-1,8-cineole (TAIR:AT3G25820.1); Has 1733 Blast hits to 1705 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1729; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    9447409..9451037
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_113485.5 → NP_189212.1  terpene synthase-like sequence-1,8-cineole [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_189212.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A1I9LQI2, C0Z3K7, P0DI76, P0DI77, Q0WMV0, Q9LDF1
    UniProtKB/TrEMBL
    A0A654FBZ7
    Conserved Domains (1) summary
    cd00684
    Location:47 → 591
    Terpene_cyclase_plant_C1; Plant Terpene Cyclases, Class 1
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P0DI76.1
P0DI77.1

Gene LinkOut

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