U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Homeodomain-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 822196, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
Homeodomain-like superfamily protein
Primary source
TAIR:AT3G25990
Locus tag
AT3G25990
See related
Araport:AT3G25990
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 3
Exon count:
5
Sequence:
Chromosome: 3; NC_003074.8 (9504677..9506787, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Pyruvate kinase family protein Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene DNA-binding HORMA family protein Neighboring gene Ribonuclease inhibitor Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene Protein phosphatase 2A regulatory B subunit family protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Trihelix transcription factor GT-4 mediates salt tolerance via interaction with TEM2 in Arabidopsis. Wang XH, et al. BMC Plant Biol, 2014 Dec 3. PMID 25465615, Free PMC Article
  2. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
  3. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
  4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. GT-4 interacts with TEM2 and then co-regulates the salt responsive gene Cor15A to improve salt stress tolerance.
    Title: Trihelix transcription factor GT-4 mediates salt tolerance via interaction with TEM2 in Arabidopsis.
Submit: New GeneRIF Correction

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help
NM_113503.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of DNA-templated transcription TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
Homeodomain-like superfamily protein
NP_189228.1
  • Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT1G13450.1); Has 917 Blast hits to 790 proteins in 65 species: Archae - 0; Bacteria - 0; Metazoa - 139; Fungi - 0; Plants - 777; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    9504677..9506787 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_113503.3 → NP_189228.1  Homeodomain-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_189228.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LU92
    UniProtKB/TrEMBL
    A0A178V6U6, A0A5S9XFP4, A0A654FAQ2
    Conserved Domains (1) summary
    cd12203
    Location:53 → 118
    GT1; myb-like, SANT family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LU92.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools