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TEL1 terminal EAR1-like 1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 822211, updated on 18-Sep-2024

Summary

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Official Symbol
TEL1
Official Full Name
terminal EAR1-like 1
Primary source
TAIR:AT3G26120
Locus tag
AT3G26120
See related
Araport:AT3G26120
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
terminal EAR1-like 1
Summary
Similar to terminal ear1 in Zea mays. A member of mei2-like gene family; phylogenetic analysis revealed that TEL1 belongs to the third clade of mei2-like proteins (TEL clade), with conserved two N-terminal RNA recognition motifs (RRM), in addition to the C-terminal RRM, shared among all mei2-like proteins.
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Genomic context

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See TEL1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
6
Sequence:
Chromosome: 3; NC_003074.8 (9546259..9549453)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Anther-specific protein agp1-like protein Neighboring gene Pyridoxal-5'-phosphate-dependent enzyme family protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Cellulase (glycosyl hydrolase family 5) protein Neighboring gene cytochrome P450, family 86, subfamily C, polypeptide 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
terminal EAR1-like 1
NP_189242.1
  • terminal EAR1-like 1 (TEL1); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: primary root apical meristem, cotyledon primordium, shoot apical meristem, floral meristem, embryonic shoot apical meristem; EXPRESSED DURING: D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), RNA recognition motif 2 (InterPro:IPR007201), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: terminal EAR1-like 2 (TAIR:AT1G67770.1); Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    9546259..9549453
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_113518.3 → NP_189242.1  terminal EAR1-like 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_189242.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654FG60, F4JBE2
    Conserved Domains (4) summary
    COG0724
    Location:214 → 332
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12275
    Location:105 → 174
    RRM1_MEI2_EAR1_like; RNA recognition motif 1 in Mei2-like proteins and terminal EAR1-like proteins
    cd12527
    Location:212 → 282
    RRM2_EAR1_like; RNA recognition motif 2 in terminal EAR1-like proteins
    cd12530
    Location:407 → 514
    RRM3_EAR1_like; RNA recognition motif 3 in terminal EAR1-like proteins
Nucleotide Protein
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