CSLC04 Cellulose-synthase-like C4 [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Gene symbol: CSLC04
Gene description: Cellulose-synthase-like C4
Primary source: Araport:AT3G28180
Locus tag: AT3G28180
See related: TAIR:AT3G28180
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: ATCSLC04; ATCSLC4; CELLULOSE-SYNTHASE LIKE C4; Cellulose-synthase-like C4; CSLC4
Summary: encodes a gene similar to cellulose synthase
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Genomic context

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See CSLC04 in Genome Data Viewer

Location:: chromosome: 3

Exon count:: 4

Sequence:: Chromosome: 3; NC_003074.8 (10505711..10509265)

Chromosome 3 - NC_003074.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

The supramolecular organization of the CSLC4, XXT1, XXT2, and XXT5 proteins in Arabidopsis protoplasts, was investigated.
Title: Xyloglucan xylosyltransferases XXT1, XXT2, and XXT5 and the glucan synthase CSLC4 form Golgi-localized multiprotein complexes.
CSLA9 and CSLC4 localize to the Golgi and have opposite membrane orientations.
Title: Arabidopsis mannan synthase CSLA9 and glucan synthase CSLC4 have opposite orientations in the Golgi membrane.

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Pathways from PubChem

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_113737.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables cellulose synthase activity	ISS Inferred from Sequence or Structural Similarity more info
enables glycosyltransferase activity	IMP Inferred from Mutant Phenotype more info	PubMed
enables glycosyltransferase activity	ISS Inferred from Sequence or Structural Similarity more info
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed
enables protein homodimerization activity	IPI Inferred from Physical Interaction more info	PubMed

Process	Evidence Code	Pubs
involved_in cell wall organization	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in plant organ development	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in pollen tube development	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in Golgi apparatus	HDA more info	PubMed
located_in Golgi apparatus	ISM Inferred from Sequence Model more info
located_in Golgi trans cisterna	HDA more info	PubMed
located_in endosome	HDA more info	PubMed
located_in trans-Golgi network	HDA more info	PubMed

General protein information

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Preferred Names: Cellulose-synthase-like C4

NP_566835.1

Cellulose-synthase-like C4 (CSLC04); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: Cellulose-synthase-like C5 (TAIR:AT4G31590.1); Has 5595 Blast hits to 5589 proteins in 1569 species: Archae - 192; Bacteria - 4449; Metazoa - 13; Fungi - 97; Plants - 511; Viruses - 16; Other Eukaryotes - 317 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003074.8 Reference assembly

Range

10505711..10509265

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_113737.3 → NP_566835.1 Cellulose-synthase-like C4 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_566835.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q9LJP4

UniProtKB/TrEMBL

A0A178V9W0, A0A654FCT3, W8Q6R3

Conserved Domains (2) summary

cl11394
Location:199 → 435

Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

cl17486
Location:4 → 70

Sipho_tail; Phage tail protein