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[ Arabidopsis thaliana (thale cress) ]

Gene ID: 822485, updated on 22-Aug-2024

Summary

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Primary source
Araport:AT3G28550
Locus tag
AT3G28550
See related
TAIR:AT3G28550
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_003074.8 (10700562..10704018, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene UDP-glucose 4-epimerase Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene BCS1 AAA-type ATPase Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_113775.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables structural constituent of cell wall IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in plant-type cell wall organization IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
Proline-rich extensin-like family protein
NP_189496.2
  • Proline-rich extensin-like family protein; FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Extensin-like repeat (InterPro:IPR006706); BEST Arabidopsis thaliana protein match is: Proline-rich extensin-like family protein (TAIR:AT3G54580.1); Has 433536 Blast hits to 44790 proteins in 1795 species: Archae - 956; Bacteria - 66952; Metazoa - 162710; Fungi - 67978; Plants - 67619; Viruses - 11578; Other Eukaryotes - 55743 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    10700562..10704018 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001338959.1 → NP_001327211.1  Proline-rich extensin-like family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LRL7

  2. NM_113775.3 → NP_189496.2  Proline-rich extensin-like family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654FBS3, F4J0B5
Nucleotide Protein
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