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ATA1 TAPETUM 1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 823352, updated on 18-Sep-2024

Summary

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Official Symbol
ATA1
Official Full Name
TAPETUM 1
Primary source
TAIR:AT3G42960
Locus tag
AT3G42960
See related
Araport:AT3G42960
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ALCOHOL DEHYDROGENASE; ASD; TA1; TAPETUM 1; TAPETUM1
Summary
Arabidopsis homolog of TASSELSEED2. Expressed specifically in tapetal cells.
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Genomic context

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See ATA1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_003074.8 (15018695..15019685, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene Pectin lyase-like superfamily protein Neighboring gene pseudo Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
  2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_114164.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables identical protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
TAPETUM 1
NP_189882.1
  • TAPETUM 1 (ATA1); FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: flower development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G26760.1); Has 115619 Blast hits to 115418 proteins in 3535 species: Archae - 928; Bacteria - 77402; Metazoa - 4592; Fungi - 5922; Plants - 2472; Viruses - 7; Other Eukaryotes - 24296 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    15018695..15019685 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_114164.2 → NP_189882.1  TAPETUM 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_189882.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O24452, Q8LDB0, Q9M1K9
    UniProtKB/TrEMBL
    A0A178VAC4, A0A5S9XHW0
    Conserved Domains (2) summary
    PLN02253
    Location:4 → 268
    PLN02253; xanthoxin dehydrogenase
    cl21454
    Location:7 → 261
    NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9M1K9.1

Gene LinkOut

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