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Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824358, updated on 18-Sep-2024

Summary

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Official Full Name
Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein
Primary source
TAIR:AT3G51950
Locus tag
AT3G51950
See related
Araport:AT3G51950
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
10
Sequence:
Chromosome: 3; NC_003074.8 (19277594..19281393, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene oxidoreductase/transition metal ion-binding protein Neighboring gene basic leucine zipper 24 Neighboring gene ncRNA Neighboring gene acyl-CoA sterol acyl transferase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase. Van Leene J, et al. Nat Plants, 2019 Mar. PMID 30833711
  2. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article
  3. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, et al. Genes Dev, 2009 Jan 1. PMID 19095804, Free PMC Article
  4. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
  5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001035763.2
NM_001339541.1
NM_001339542.1
NM_115054.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mRNA binding HDA PubMed 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein
NP_001030840.1
  • Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G63450.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_190763.1
  • Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, zinc ion binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G63450.3); Has 248 Blast hits to 214 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 5; Plants - 227; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    19277594..19281393 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_115054.4 → NP_190763.1  Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_190763.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A1I9LPV9, Q8L9E0, Q8RXK0, Q9SV09
    UniProtKB/TrEMBL
    A0A5S9XK38, A0A654FIE7
    Conserved Domains (3) summary
    smart00356
    Location:149 → 174
    ZnF_C3H1; zinc finger
    COG0724
    Location:270 → 437
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12458
    Location:260 → 329
    RRM_AtC3H46_like; RNA recognition motif (RRM) found in Arabidopsis thaliana zinc finger CCCH domain-containing protein 46 (AtC3H46) and similar proteins

  2. NM_001339541.1 → NP_001326633.1  Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A1I9LPV9, Q8L9E0, Q8RXK0, Q9SV09
    UniProtKB/TrEMBL
    A0A5S9XK38, A0A654FIE7
    Conserved Domains (3) summary
    smart00356
    Location:149 → 174
    ZnF_C3H1; zinc finger
    COG0724
    Location:270 → 437
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12458
    Location:260 → 329
    RRM_AtC3H46_like; RNA recognition motif (RRM) found in Arabidopsis thaliana zinc finger CCCH domain-containing protein 46 (AtC3H46) and similar proteins

  3. NM_001035763.2 → NP_001030840.1  Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001030840.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A1I9LPV9, Q8L9E0, Q8RXK0, Q9SV09
    UniProtKB/TrEMBL
    A0A5S9XK38, A0A654FIE7
    Conserved Domains (3) summary
    smart00356
    Location:149 → 174
    ZnF_C3H1; zinc finger
    COG0724
    Location:270 → 437
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12458
    Location:260 → 329
    RRM_AtC3H46_like; RNA recognition motif (RRM) found in Arabidopsis thaliana zinc finger CCCH domain-containing protein 46 (AtC3H46) and similar proteins

  4. NM_001339542.1 → NP_001326632.1  Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A1I9LPV9, Q8L9E0, Q8RXK0, Q9SV09
    UniProtKB/TrEMBL
    A0A5S9XK38, A0A654FIE7
    Conserved Domains (3) summary
    smart00356
    Location:149 → 174
    ZnF_C3H1; zinc finger
    COG0724
    Location:270 → 437
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12458
    Location:260 → 329
    RRM_AtC3H46_like; RNA recognition motif (RRM) found in Arabidopsis thaliana zinc finger CCCH domain-containing protein 46 (AtC3H46) and similar proteins
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SV09.1

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