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MICPUN_91017 SNF2 super family [ Micromonas commoda ]

Gene ID: 8244101, updated on 16-Nov-2023

Summary

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Gene symbol
MICPUN_91017
Gene description
SNF2 super family
Locus tag
MICPUN_91017
Gene type
protein coding
RNA name
SNF2 super family
RefSeq status
PROVISIONAL
Organism
Micromonas commoda (strain: RCC299)
Lineage
Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
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Genomic context

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See MICPUN_91017 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
3
Sequence:
Chromosome: 6; NC_013043.1 (384694..391395, complement)

Chromosome 6 - NC_013043.1Genomic Context describing neighboring genes Neighboring gene predicted protein Neighboring gene predicted protein Neighboring gene predicted protein Neighboring gene predicted protein Neighboring gene predicted protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_013043.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Worden AZ, et al. Science, 2009 Apr 10. PMID 19359590
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
SNF2 super family
XP_002503171.1
  • SNF2 superfamily chromatin remodeling protein; predicted member of the imitation-switch (ISWI) class of ATP-dependent chromatin remodeling complexes protein involved in regulation of transcription

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_013043.1 Reference assembly

    Range
    384694..391395 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002503125.1 → XP_002503171.1  SNF2 super family [Micromonas commoda]

    See identical proteins and their annotated locations for XP_002503171.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    C1E808
    Conserved Domains (5) summary
    PLN03142
    Location:19 → 1011
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    cd00046
    Location:186 → 326
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam00271
    Location:485 → 582
    Helicase_C; Helicase conserved C-terminal domain
    pfam09110
    Location:739 → 830
    HAND; HAND
    pfam09111
    Location:893 → 1002
    SLIDE; SLIDE
Nucleotide Protein
Heading Accession and Version

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