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RAB6-interacting golgin (DUF662) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824456, updated on 18-Sep-2024

Summary

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Official Full Name
RAB6-interacting golgin (DUF662)
Primary source
TAIR:AT3G52900
Locus tag
AT3G52900
See related
Araport:AT3G52900
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
4
Sequence:
Chromosome: 3; NC_003074.8 (19613078..19614027)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene monodehydroascorbate reductase 1 Neighboring gene KCBP-interacting protein kinase Neighboring gene Polynucleotidyl transferase, ribonuclease H-like superfamily protein Neighboring gene growth-regulating factor 4 Neighboring gene transcriptional activator (DUF662)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_115150.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RAB6-interacting golgin (DUF662)
NP_190858.1
  • Family of unknown function (DUF662); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF662 (InterPro:IPR007033); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF662) (TAIR:AT2G36355.1); Has 299 Blast hits to 297 proteins in 71 species: Archae - 2; Bacteria - 15; Metazoa - 102; Fungi - 2; Plants - 124; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    19613078..19614027
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_115150.3 → NP_190858.1  RAB6-interacting golgin (DUF662) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_190858.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VKY3, A0A384KDK5, A0A654FG66, Q8LFC2, Q9LFA1
    Conserved Domains (1) summary
    pfam04949
    Location:13 → 162
    Transcrip_act; Transcriptional activator
Nucleotide Protein
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