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CAP-gly domain linker [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824672, updated on 18-Sep-2024

Summary

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Official Full Name
CAP-gly domain linker
Primary source
TAIR:AT3G55060
Locus tag
AT3G55060
See related
Araport:AT3G55060
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
6
Sequence:
Chromosome: 3; NC_003074.8 (20402963..20407103, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene phosphatidylglycerolphosphate synthase 2 Neighboring gene glutathione transferase lambda 2 Neighboring gene Protein phosphatase 2C family protein Neighboring gene LisH/CRA/RING-U-box domains-containing protein Neighboring gene SET domain-containing protein Neighboring gene ABC-2 type transporter family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Markers

  • At3g55060_Arabidopsis_lyrata_ssp._lyrata_CAN1 (e-PCR)
  • At3g55060_Arabidopsis_lyrata_ssp._petraea_GER1 (e-PCR)
NM_001339715.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
CAP-gly domain linker
NP_001319753.1
  • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G39300.2); Has 61765 Blast hits to 33720 proteins in 2065 species: Archae - 846; Bacteria - 6964; Metazoa - 31967; Fungi - 5247; Plants - 3104; Viruses - 205; Other Eukaryotes - 13432 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    20402963..20407103 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_115364.3 → NP_191066.1  CAP-gly domain linker [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191066.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2ERD6, Q9M2W0
    Conserved Domains (1) summary
    TIGR02168
    Location:301 → 888
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  2. NM_001339716.1 → NP_001326555.1  CAP-gly domain linker [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LPM7, A0A7G2ERD6

  3. NM_001339715.1 → NP_001319753.1  CAP-gly domain linker [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2ERD6, Q9M2W0
Nucleotide Protein
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