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Sodium Bile acid symporter family [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824782, updated on 18-Sep-2024

Summary

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Official Full Name
Sodium Bile acid symporter family
Primary source
TAIR:AT3G56160
Locus tag
AT3G56160
See related
Araport:AT3G56160
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
14
Sequence:
Chromosome: 3; NC_003074.8 (20837365..20841734, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene DUF399 family protein, putative (DUF399 and DUF3411) Neighboring gene eukaryotic translation initiation factor 3C Neighboring gene Ca-2+ dependent nuclease Neighboring gene LURP-one-like protein (DUF567) Neighboring gene alpha-soluble NSF attachment protein 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A user-friendly platform for yeast two-hybrid library screening using next generation sequencing. Erffelinck ML, et al. PLoS One, 2018. PMID 30576311, Free PMC Article
  2. Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis. Froehlich JE, et al. J Proteome Res, 2003 Jul-Aug. PMID 12938931
  3. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
  4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001339776.1
NM_115474.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast envelope HDA PubMed 

General protein information

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Preferred Names
Sodium Bile acid symporter family
NP_191175.2
  • Sodium Bile acid symporter family; FUNCTIONS IN: bile acid:sodium symporter activity; INVOLVED IN: sodium ion transport; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bile acid:sodium symporter (InterPro:IPR002657); Has 3096 Blast hits to 3087 proteins in 1049 species: Archae - 42; Bacteria - 2090; Metazoa - 108; Fungi - 101; Plants - 149; Viruses - 0; Other Eukaryotes - 606 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    20837365..20841734 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001339774.1 → NP_001326519.1  Sodium Bile acid symporter family [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VBA0, A0A1I9LPI7
    Conserved Domains (1) summary
    cl19217
    Location:81 → 397
    SBF; Sodium Bile acid symporter family

  2. NM_001339773.1 → NP_001326518.1  Sodium Bile acid symporter family [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VBA0, A0A1I9LPI6
    Conserved Domains (1) summary
    cl19217
    Location:81 → 327
    SBF; Sodium Bile acid symporter family

  3. NM_001339775.1 → NP_001326516.1  Sodium Bile acid symporter family [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LPI4
    Conserved Domains (1) summary
    cl19217
    Location:81 → 254
    SBF; Sodium Bile acid symporter family

  4. NM_115474.3 → NP_191175.2  Sodium Bile acid symporter family [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191175.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4IZC4, Q9LYM5
    UniProtKB/TrEMBL
    A0A178VBA0, A0A654FG92
    Conserved Domains (1) summary
    cl19217
    Location:108 → 424
    SBF; Sodium Bile acid symporter family

  5. NM_001339776.1 → NP_001326517.1  Sodium Bile acid symporter family [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LPI5
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4IZC4.1

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