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transmembrane protein, putative (DUF247) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 825218, updated on 18-Sep-2024

Summary

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Official Full Name
transmembrane protein, putative (DUF247)
Primary source
TAIR:AT3G60470
Locus tag
AT3G60470
See related
Araport:AT3G60470
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_003074.8 (22344758..22347121)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Phosphoglycerate mutase family protein Neighboring gene myb-like HTH transcriptional regulator family protein Neighboring gene StAR lipid transfer-like protein Neighboring gene Integrase-type DNA-binding superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_115911.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
transmembrane protein, putative (DUF247)
NP_191606.1
  • Plant protein of unknown function (DUF247); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT2G28580.1); Has 1401 Blast hits to 907 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1401; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    22344758..22347121
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_115911.3 → NP_191606.1  transmembrane protein, putative (DUF247) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191606.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654FJI5, A0MF36, Q9M212
    Conserved Domains (1) summary
    pfam03140
    Location:34 → 525
    DUF247; Plant protein of unknown function
Nucleotide Protein
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