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glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 826365, updated on 18-Sep-2024

Summary

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Official Full Name
glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein
Primary source
TAIR:AT4G08160
Locus tag
AT4G08160
See related
Araport:AT4G08160
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATXYN3; F9M13.1; F9M13_1
Summary
Encodes a putative glycosyl hydrolase family 10 protein (xylanase).
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Genomic context

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Location:
chromosome: 4
Exon count:
7
Sequence:
Chromosome: 4; NC_003075.7 (5159033..5162867, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Inositol 1,3,4-trisphosphate 5/6-kinase family protein Neighboring gene OSBP(oxysterol binding protein)-related protein 1C

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The ATE genes are responsible for repression of transdifferentiation into xylem cells in Arabidopsis. Sawa S, et al. Plant Physiol, 2005 Jan. PMID 15618413, Free PMC Article
  2. A xylanase, AtXyn1, is predominantly expressed in vascular bundles, and four putative xylanase genes were identified in the Arabidopsis thaliana genome. Suzuki M, et al. Plant Cell Physiol, 2002 Jul. PMID 12154138
  3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Ectopic expression of Xyn3 during transdifferention in A. thaliana.[Xyn3]
    Title: The ATE genes are responsible for repression of transdifferentiation into xylem cells in Arabidopsis.
Submit: New GeneRIF Correction

General gene information

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Markers

Homology

NM_001036516.1
NM_116885.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables endo-1,4-beta-xylanase activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
involved_in xylan catabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein
NP_001031593.1
  • glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein; FUNCTIONS IN: endo-1,4-beta-xylanase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 10 (InterPro:IPR001000), Carbohydrate-binding, CenC-like (InterPro:IPR003305), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Galactose-binding domain-like (InterPro:IPR008979), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (TAIR:AT1G58370.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_192556.2
  • glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein; FUNCTIONS IN: endo-1,4-beta-xylanase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 10 (InterPro:IPR001000), Carbohydrate-binding, CenC-like (InterPro:IPR003305), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (TAIR:AT1G58370.1); Has 2332 Blast hits to 2198 proteins in 440 species: Archae - 10; Bacteria - 1281; Metazoa - 20; Fungi - 351; Plants - 356; Viruses - 0; Other Eukaryotes - 314 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    5159033..5162867 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_116885.4 → NP_192556.2  glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_192556.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4JG10, Q8GYW5, Q9C5T7, Q9SYE3
    UniProtKB/TrEMBL
    A0A178V5D5, A0A5S9XQC3
    Conserved Domains (2) summary
    smart00633
    Location:443 → 689
    Glyco_10; Glycosyl hydrolase family 10
    pfam02018
    Location:196 → 347
    CBM_4_9; Carbohydrate binding domain

  2. NM_001036516.1 → NP_001031593.1  glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031593.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V5D5, F4JG11
    Conserved Domains (2) summary
    smart00633
    Location:443 → 657
    Glyco_10; Glycosyl hydrolase family 10
    pfam02018
    Location:27 → 164
    CBM_4_9; Carbohydrate binding domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4JG10.1

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