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SBP2 selenium-binding protein 2 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827040, updated on 18-Sep-2024

Summary

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Official Symbol
SBP2
Official Full Name
selenium-binding protein 2
Primary source
TAIR:AT4G14040
Locus tag
AT4G14040
See related
Araport:AT4G14040
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
DL3061C; EDA38; EMBRYO SAC DEVELOPMENT ARREST 38; FCAALL.29; selenium-binding protein 2
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Genomic context

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See SBP2 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
6
Sequence:
Chromosome: 4; NC_003075.7 (8100349..8103094, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Rapid alkalinization factor (RALF) family protein Neighboring gene selenium-binding protein 1 Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene Polyketide cyclase/dehydrase and lipid transport superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Promoter analysis and functional implications of the selenium binding protein (SBP) gene family in Arabidopsis thaliana. Valassakis C, et al. J Plant Physiol, 2018 May-Jun. PMID 29574326
  2. A pair of G-type lectin receptor-like kinases modulates nlp20-mediated immune responses by coupling to the RLP23 receptor complex. Bao Y, et al. J Integr Plant Biol, 2023 May. PMID 36633200
  3. Protein and metabolite composition of Arabidopsis stress granules. Kosmacz M, et al. New Phytol, 2019 May. PMID 30664249
  4. Genetic and molecular identification of genes required for female gametophyte development and function in Arabidopsis. Pagnussat GC, et al. Development, 2005 Feb. PMID 15634699
  5. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Klopffleisch K, et al. Mol Syst Biol, 2011 Sep 27. PMID 21952135, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_117479.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables selenium binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within polar nucleus fusion IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in cytoplasmic stress granule IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytosol HDA PubMed 

General protein information

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Preferred Names
selenium-binding protein 2
NP_193140.1
  • selenium-binding protein 2 (SBP2); FUNCTIONS IN: selenium binding; INVOLVED IN: polar nucleus fusion; LOCATED IN: cellular_component unknown; EXPRESSED IN: guard cell; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 (InterPro:IPR011048), Selenium-binding protein (InterPro:IPR008826); BEST Arabidopsis thaliana protein match is: selenium-binding protein 1 (TAIR:AT4G14030.2); Has 907 Blast hits to 897 proteins in 207 species: Archae - 39; Bacteria - 194; Metazoa - 215; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 379 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    8100349..8103094 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_117479.4 → NP_193140.1  selenium-binding protein 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193140.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O23265, Q8L7F3, Q93WN0, Q9ASS5
    UniProtKB/TrEMBL
    A0A5S9XSD2, A0A654FP28
    Conserved Domains (1) summary
    pfam05694
    Location:20 → 487
    SBP56; 56kDa selenium binding protein (SBP56)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q93WN0.1

Gene LinkOut

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