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FRIGIDA-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827147, updated on 18-Sep-2024

Summary

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Official Full Name
FRIGIDA-like protein
Primary source
TAIR:AT4G14900
Locus tag
AT4G14900
See related
Araport:AT4G14900
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
DL3490C; FCAALL.410
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Genomic context

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Location:
chromosome: 4
Exon count:
3
Sequence:
Chromosome: 4; NC_003075.7 (8520782..8524217, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ovate family protein 11 Neighboring gene secE/sec61-gamma protein transport protein Neighboring gene O-acetylserine (thiol) lyase (OAS-TL) isoform A1 Neighboring gene 2Fe-2S ferredoxin-like superfamily protein Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene HISTIDINE BIOSYNTHESIS 5B

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_117576.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
FRIGIDA-like protein
NP_567447.1
  • FRIGIDA-like protein; CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: FRIGIDA-like protein (TAIR:AT3G22440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    8520782..8524217 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_117576.3 → NP_567447.1  FRIGIDA-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567447.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8W4S7, Q940H8
    UniProtKB/TrEMBL
    A0A178UV71, A0A7G2F0T5
    Conserved Domains (1) summary
    pfam07899
    Location:119 → 411
    Frigida; Frigida-like protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q940H8.1

Gene LinkOut

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