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Histone H3 K4-specific methyltransferase SET7/9 family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827416, updated on 18-Sep-2024

Summary

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Official Full Name
Histone H3 K4-specific methyltransferase SET7/9 family protein
Primary source
TAIR:AT4G17080
Locus tag
AT4G17080
See related
Araport:AT4G17080
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
DL4570W; FCAALL.347
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Genomic context

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Location:
chromosome: 4
Exon count:
3
Sequence:
Chromosome: 4; NC_003075.7 (9601348..9604265)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ureidoglycine aminohydrolase Neighboring gene FRIGIDA interacting protein 2 Neighboring gene peptidyl-prolyl cis-trans isomerase Neighboring gene Putative membrane lipoprotein Neighboring gene chloroplast beta-amylase Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A user-friendly platform for yeast two-hybrid library screening using next generation sequencing. Erffelinck ML, et al. PLoS One, 2018. PMID 30576311, Free PMC Article
  2. Differential binding of calmodulin-related proteins to their targets revealed through high-density Arabidopsis protein microarrays. Popescu SC, et al. Proc Natl Acad Sci U S A, 2007 Mar 13. PMID 17360592, Free PMC Article
  3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198
  4. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_117812.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in lipid droplet IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Histone H3 K4-specific methyltransferase SET7/9 family protein
NP_193441.5
  • Histone H3 K4-specific methyltransferase SET7/9 family protein; CONTAINS InterPro DOMAIN/s: MORN motif (InterPro:IPR003409); BEST Arabidopsis thaliana protein match is: Histone H3 K4-specific methyltransferase SET7/9 family protein (TAIR:AT2G35170.1); Has 26543 Blast hits to 6479 proteins in 565 species: Archae - 0; Bacteria - 4119; Metazoa - 3892; Fungi - 164; Plants - 2567; Viruses - 0; Other Eukaryotes - 15801 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    9601348..9604265
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_117812.6 → NP_193441.5  Histone H3 K4-specific methyltransferase SET7/9 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193441.5

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UYG3, O23552, Q8L7W4
    Conserved Domains (2) summary
    PLN03185
    Location:256 → 415
    PLN03185; phosphatidylinositol phosphate kinase; Provisional
    cd16914
    Location:156 → 219
    EcfT; T component of ECF-type transporters
Nucleotide Protein
Heading Accession and Version

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