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O-Glycosyl hydrolases family 17 protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827429, updated on 18-Sep-2024

Summary

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Official Full Name
O-Glycosyl hydrolases family 17 protein
Primary source
TAIR:AT4G17180
Locus tag
AT4G17180
See related
Araport:AT4G17180
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
DL4625W; FCAALL.368
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Genomic context

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Location:
chromosome: 4
Exon count:
2
Sequence:
Chromosome: 4; NC_003075.7 (9646466..9648323)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene RAB GTPase homolog B1C Neighboring gene farnesyl diphosphate synthase 2 Neighboring gene F-box and associated interaction domains-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198
  2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

GeneRIFs: Gene References Into Functions

General gene information

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NM_117822.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables glucan endo-1,3-beta-D-glucosidase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
O-Glycosyl hydrolases family 17 protein
NP_193451.2
  • O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT4G31140.1); Has 2802 Blast hits to 2733 proteins in 160 species: Archae - 0; Bacteria - 8; Metazoa - 3; Fungi - 65; Plants - 2718; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    9646466..9648323
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_117822.4 → NP_193451.2  O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193451.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2F150, Q8GYS2
    Conserved Domains (2) summary
    smart00768
    Location:359 → 440
    X8; Possibly involved in carbohydrate binding
    cl23725
    Location:25 → 338
    Glyco_hydro_1; Glycosyl hydrolase family 1
Nucleotide Protein
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