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LOC8277985 pyridoxal phosphate homeostasis protein [ Ricinus communis (castor bean) ]

Gene ID: 8277985, updated on 30-Nov-2023

Summary

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Gene symbol
LOC8277985
Gene description
pyridoxal phosphate homeostasis protein
Locus tag
RCOM_0903650
Gene type
protein coding
RefSeq status
MODEL
Organism
Ricinus communis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Genomic context

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See LOC8277985 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
7
Annotation release Status Assembly Chr Location
102 current ASM1957865v1 (GCF_019578655.1) 5 NC_063260.1 (31682411..31685193)
101 previous assembly JCVI_RCG_1.1 (GCF_000151685.1) Unplaced Scaffold NW_002994332.1 (247469..250212, complement)

Chromosome 5 - NC_063260.1Genomic Context describing neighboring genes Neighboring gene stigma-specific STIG1-like protein 1 Neighboring gene cytochrome b561 and DOMON domain-containing protein At5g35735 Neighboring gene uncharacterized LOC8277984 Neighboring gene glycosyltransferase BC10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular anatomical structure IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pyridoxal phosphate homeostasis protein
Names
proline synthase co-transcribed bacterial homolog protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ricinus communis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1957865v1

Genomic

  1. NC_063260.1 Reference ASM1957865v1

    Range
    31682411..31685193
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002518391.4 → XP_002518437.1  pyridoxal phosphate homeostasis protein

    See identical proteins and their annotated locations for XP_002518437.1

    UniProtKB/TrEMBL
    B9RXG8
    Conserved Domains (1) summary
    cd06822
    Location:41 → 262
    PLPDE_III_YBL036c_euk; Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins
Nucleotide Protein
Heading Accession and Version

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