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Transducin family protein / WD-40 repeat family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827918, updated on 18-Sep-2024

Summary

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Official Full Name
Transducin family protein / WD-40 repeat family protein
Primary source
TAIR:AT4G01860
Locus tag
AT4G01860
See related
Araport:AT4G01860
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T7B11.12; T7B11_12
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Genomic context

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Location:
chromosome: 4
Exon count:
21
Sequence:
Chromosome: 4; NC_003075.7 (801032..808087, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Ca2+ activated outward rectifying K+ channel 5 Neighboring gene S-adenosylmethionine synthetase 2 Neighboring gene tRNA-Phe Neighboring gene tolB protein-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases. Lee JH, et al. Plant Cell, 2008 Jan. PMID 18223036, Free PMC Article
  2. Arabidopsis DDB1-CUL4 ASSOCIATED FACTOR1 forms a nuclear E3 ubiquitin ligase with DDB1 and CUL4 that is involved in multiple plant developmental processes. Zhang Y, et al. Plant Cell, 2008 Jun. PMID 18552200, Free PMC Article
  3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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Markers

NM_116416.4
NM_179205.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
part_of Cul4-RING E3 ubiquitin ligase complex ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Transducin family protein / WD-40 repeat family protein
NP_192095.2
  • Transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT2G43770.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_849536.1
  • Transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT2G43770.1); Has 18202 Blast hits to 10734 proteins in 529 species: Archae - 38; Bacteria - 4707; Metazoa - 5622; Fungi - 3824; Plants - 1793; Viruses - 0; Other Eukaryotes - 2218 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    801032..808087 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_116416.4 → NP_192095.2  Transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_192095.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XQU8, Q8RXC4
    Conserved Domains (3) summary
    COG2319
    Location:45 → 541
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:192 → 233
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:6 → 344
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  2. NM_179205.4 → NP_849536.1  Transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849536.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XQU8, Q8RXC4
    Conserved Domains (3) summary
    COG2319
    Location:45 → 541
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:192 → 233
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:6 → 344
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
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