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SRF3 STRUBBELIG-receptor family 3 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827941, updated on 18-Sep-2024

Summary

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Official Symbol
SRF3
Official Full Name
STRUBBELIG-receptor family 3
Primary source
TAIR:AT4G03390
Locus tag
AT4G03390
See related
Araport:AT4G03390
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F4C21.35; F4C21_35; STRUBBELIG-receptor family 3
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Genomic context

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See SRF3 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
17
Sequence:
Chromosome: 4; NC_003075.7 (1490426..1495214, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene Auxin-responsive GH3 family protein Neighboring gene Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The receptor kinase SRF3 coordinates iron-level and flagellin dependent defense and growth responses in plants. Platre MP, et al. Nat Commun, 2022 Aug 1. PMID 35915109, Free PMC Article
  2. Natural variation at Strubbelig Receptor Kinase 3 drives immune-triggered incompatibilities between Arabidopsis thaliana accessions. Alcázar R, et al. Nat Genet, 2010 Dec. PMID 21037570
  3. Coordinated transcriptional regulation underlying the circadian clock in Arabidopsis. Li G, et al. Nat Cell Biol, 2011 May. PMID 21499259
  4. An extracellular network of Arabidopsis leucine-rich repeat receptor kinases. Smakowska-Luzan E, et al. Nature, 2018 Jan 18. PMID 29320478, Free PMC Article
  5. A high content in lipid-modified peripheral proteins and integral receptor kinases features in the arabidopsis plasma membrane proteome. Marmagne A, et al. Mol Cell Proteomics, 2007 Nov. PMID 17644812

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Variation in disease susceptibility suggests a basis for the molecular patterns of a recent selective sweep detected at the SRF3 locus in central Asian populations.
    Title: Natural variation at Strubbelig Receptor Kinase 3 drives immune-triggered incompatibilities between Arabidopsis thaliana accessions.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

NM_001340445.1
NM_116577.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables kinase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within callose deposition in cell wall IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within circadian rhythm IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within multicellular organismal-level iron ion homeostasis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in plasma membrane HDA PubMed 
is_active_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasmodesmatal plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
STRUBBELIG-receptor family 3
NP_192248.2
  • STRUBBELIG-receptor family 3 (SRF3); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: STRUBBELIG-receptor family 1 (TAIR:AT2G20850.1); Has 154480 Blast hits to 110338 proteins in 3974 species: Archae - 96; Bacteria - 13338; Metazoa - 40210; Fungi - 7879; Plants - 76281; Viruses - 315; Other Eukaryotes - 16361 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    1490426..1495214 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_116577.5 → NP_192248.2  STRUBBELIG-receptor family 3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_192248.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WS32, Q6R2K3, Q9ZQZ2
    UniProtKB/TrEMBL
    A0A5S9XPJ0, A0A7G2EY75, C0LGQ2
    Conserved Domains (5) summary
    sd00033
    Location:100 → 121
    LRR_RI; leucine-rich repeat [structural motif]
    pfam07714
    Location:491 → 759
    Pkinase_Tyr; Protein tyrosine kinase
    pfam08263
    Location:32 → 72
    LRRNT_2; Leucine rich repeat N-terminal domain
    pfam13855
    Location:121 → 180
    LRR_8; Leucine rich repeat
    cl21453
    Location:491 → 762
    PKc_like; Protein Kinases, catalytic domain

  2. NM_001340445.1 → NP_001329389.1  STRUBBELIG-receptor family 3 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WS32, Q6R2K3, Q9ZQZ2
    UniProtKB/TrEMBL
    A0A5S9XPJ0, A0A7G2EY75, C0LGQ2
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6R2K3.1

Gene LinkOut

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