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MGP4 Nucleotide-diphospho-sugar transferase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828028, updated on 18-Sep-2024

Summary

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Official Symbol
MGP4
Official Full Name
Nucleotide-diphospho-sugar transferase family protein
Primary source
TAIR:AT4G01220
Locus tag
AT4G01220
See related
Araport:AT4G01220
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F2N1.35; F2N1_35; male gametophyte defective 4
Summary
Encodes MGP4 (MALE GAMETOPHYTE DEFECTIVE 4), a rhamnogalacturonan II xylosyltransferase important for growth of pollen tubes and roots.
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Genomic context

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See MGP4 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
4
Sequence:
Chromosome: 4; NC_003075.7 (513053..515853, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Calcium-dependent lipid-binding (CaLB domain) family protein Neighboring gene glycosyl transferase family 1 protein Neighboring gene Reticulon family protein Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A putative Arabidopsis thaliana glycosyltransferase, At4g01220, which is closely related to three plant cell wall-specific xylosyltransferases, is differentially expressed spatially and temporally. Fangel JU, et al. Plant Sci, 2011 Mar. PMID 21421394
  2. Male gametophyte defective 4 encodes a rhamnogalacturonan II xylosyltransferase and is important for growth of pollen tubes and roots in Arabidopsis. Liu XL, et al. Plant J, 2011 Feb. PMID 21288267
  3. Separating Golgi Proteins from Cis to Trans Reveals Underlying Properties of Cisternal Localization. Parsons HT, et al. Plant Cell, 2019 Sep. PMID 31266899, Free PMC Article
  4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. MGP4 is important for the normal growth of pollen tubes and roots, and functions as a xylosyltransferase, participating in the biosynthesis of rhamnogalacturonan II.
    Title: Male gametophyte defective 4 encodes a rhamnogalacturonan II xylosyltransferase and is important for growth of pollen tubes and roots in Arabidopsis.
Submit: New GeneRIF Correction

General gene information

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NM_116352.3
NM_178948.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables xylosyltransferase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within pollen tube development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within rhamnogalacturonan II biosynthetic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in Golgi trans cisterna HDA PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Nucleotide-diphospho-sugar transferase family protein
NP_567211.1
  • Nucleotide-diphospho-sugar transferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388), Nucleotide-diphospho-sugar transferase, predicted (InterPro:IPR005069); BEST Arabidopsis thaliana protein match is: rhamnogalacturonan xylosyltransferase 2 (TAIR:AT4G01750.1); Has 275 Blast hits to 271 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 259; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
NP_849279.1
  • Nucleotide-diphospho-sugar transferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388), Nucleotide-diphospho-sugar transferase, predicted (InterPro:IPR005069); BEST Arabidopsis thaliana protein match is: rhamnogalacturonan xylosyltransferase 2 (TAIR:AT4G01750.1); Has 332 Blast hits to 328 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 300; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    513053..515853 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_178948.3 → NP_849279.1  Nucleotide-diphospho-sugar transferase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849279.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q5HZ43, Q94K03, Q9M146
    UniProtKB/TrEMBL
    A0A178V0Q2, A0A5S9XP45, W8QNI2
    Conserved Domains (1) summary
    pfam03407
    Location:120 → 339
    Nucleotid_trans; Nucleotide-diphospho-sugar transferase

  2. NM_116352.3 → NP_567211.1  Nucleotide-diphospho-sugar transferase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567211.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V0Q2, A0A5S9XP45
    Conserved Domains (1) summary
    pfam03407
    Location:120 → 288
    Nucleotid_trans; Nucleotide-diphospho-sugar transferase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9M146.1

Gene LinkOut

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