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XH/XS domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828058, updated on 18-Sep-2024

Summary

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Official Full Name
XH/XS domain-containing protein
Primary source
TAIR:AT4G01180
Locus tag
AT4G01180
See related
Araport:AT4G01180
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F2N1.10; F2N1_10
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Genomic context

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Location:
chromosome: 4
Exon count:
7
Sequence:
Chromosome: 4; NC_003075.7 (501287..503394, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene BTB/POZ/Kelch-associated protein Neighboring gene uncharacterized protein Neighboring gene phosphatidylinositol phosphate kinase 10 Neighboring gene Calcium-dependent lipid-binding (CaLB domain) family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. FDDM1 and FDDM2, Two SGS3-like Proteins, Function as a Complex to Affect DNA Methylation in Arabidopsis. Li S, et al. Genes (Basel), 2022 Feb 12. PMID 35205382, Free PMC Article
  2. Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins. Heazlewood JL, et al. Plant Cell, 2004 Jan. PMID 14671022, Free PMC Article
  3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in gene silencing by siRNA-directed DNA methylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in mitochondrion HDA PubMed 

General protein information

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Preferred Names
XH/XS domain-containing protein
NP_192027.1
  • XH/XS domain-containing protein; CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380), Domain of unknown function XH (InterPro:IPR005379); BEST Arabidopsis thaliana protein match is: XH/XS domain-containing protein (TAIR:AT5G59390.1); Has 49488 Blast hits to 31983 proteins in 1865 species: Archae - 714; Bacteria - 6983; Metazoa - 22984; Fungi - 2858; Plants - 1632; Viruses - 165; Other Eukaryotes - 14152 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    501287..503394 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_116348.1 → NP_192027.1  XH/XS domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_192027.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    O04614, Q9M150
    Conserved Domains (3) summary
    pfam03468
    Location:29 → 141
    XS; XS domain
    pfam03469
    Location:410 → 550
    XH; XH domain
    pfam07851
    Location:236 → 335
    TMPIT; TMPIT-like protein
Nucleotide Protein
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