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ATPMEPCRB Plant invertase/pectin methylesterase inhibitor superfamily [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828064, updated on 18-Sep-2024

Summary

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Official Symbol
ATPMEPCRB
Official Full Name
Plant invertase/pectin methylesterase inhibitor superfamily
Primary source
TAIR:AT4G02330
Locus tag
AT4G02330
See related
Araport:AT4G02330
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtPME41; pectin methylesterase 41; PME41; T14P8.14; T14P8_14
Summary
Encodes a pectin methylesterase that is sensitive to chilling stress and brassinosteroid regulation.
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Genomic context

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See ATPMEPCRB in Genome Data Viewer
Location:
chromosome: 4
Exon count:
2
Sequence:
Chromosome: 4; NC_003075.7 (1032350..1035055)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene exocyst complex component sec15B

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis thaliana Cuticle Composition Contributes to Differential Defense Response to Botrytis cinerea. Aragón W, et al. Front Plant Sci, 2021. PMID 34804086, Free PMC Article
  2. Brassinosteroids regulate pectin methylesterase activity and AtPME41 expression in Arabidopsis under chilling stress. Qu T, et al. Cryobiology, 2011 Oct. PMID 21819976
  3. Characterization of the pectin methylesterase-like gene AtPME3: a new member of a gene family comprising at least 12 genes in Arabidopsis thaliana. Micheli F, et al. Gene, 1998 Oct 5. PMID 9767082
  4. Arabidopsis PECTIN METHYLESTERASEs contribute to immunity against Pseudomonas syringae. Bethke G, et al. Plant Physiol, 2014 Feb. PMID 24367018, Free PMC Article
  5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_116466.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables enzyme inhibitor activity IEA
Inferred from Electronic Annotation
more info
  
enables pectinesterase activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables pectinesterase activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall modification IEA
Inferred from Electronic Annotation
more info
  
involved_in defense response to fungus IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in pectin catabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within response to brassinosteroid IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within response to cold IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within response to fungus IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Plant invertase/pectin methylesterase inhibitor superfamily
NP_567227.1
  • ATPMEPCRB; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: response to salt stress; LOCATED IN: endomembrane system, cell wall; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT1G02810.1); Has 2755 Blast hits to 2700 proteins in 321 species: Archae - 8; Bacteria - 597; Metazoa - 1; Fungi - 199; Plants - 1923; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    1032350..1035055
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_116466.4 → NP_567227.1  Plant invertase/pectin methylesterase inhibitor superfamily [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567227.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O49008, O81300, Q8RXK7
    UniProtKB/TrEMBL
    A0A178V0J6, A0A5S9XP60, A0A654FL73
    Conserved Domains (1) summary
    PLN02713
    Location:2 → 573
    PLN02713; Probable pectinesterase/pectinesterase inhibitor
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8RXK7.2

Gene LinkOut

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