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VAL3 VP1/ABI3-like 3 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828240, updated on 18-Sep-2024

Summary

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Official Symbol
VAL3
Official Full Name
VP1/ABI3-like 3
Primary source
TAIR:AT4G21550
Locus tag
AT4G21550
See related
Araport:AT4G21550
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F18E5.170; F18E5_170; VP1/ABI3-like 3
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Genomic context

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See VAL3 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
10
Sequence:
Chromosome: 4; NC_003075.7 (11462969..11468679)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Diacylglycerol kinase family protein Neighboring gene sphingosine kinase 1 Neighboring gene ncRNA Neighboring gene vacuolar protein sorting-associated protein-like protein Neighboring gene organic solute transporter ostalpha protein (DUF300) Neighboring gene oxidoreductase, zinc-binding dehydrogenase family protein Neighboring gene endonuclease 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Repression of the LEAFY COTYLEDON 1/B3 regulatory network in plant embryo development by VP1/ABSCISIC ACID INSENSITIVE 3-LIKE B3 genes. Suzuki M, et al. Plant Physiol, 2007 Feb. PMID 17158584, Free PMC Article
  2. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
  3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_001341497.1
NM_001341498.1
NM_118275.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
involved_in leaf development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within regulation of DNA-templated transcription ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
VP1/ABI3-like 3
NP_001320023.1
  • VP1/ABI3-like 3 (VAL3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: high-level expression of sugar-inducible gene 2 (TAIR:AT2G30470.1); Has 886 Blast hits to 853 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 879; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    11462969..11468679
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001341497.1 → NP_001320023.1  VP1/ABI3-like 3 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4JJK2, O65420, Q9SVT6
    UniProtKB/TrEMBL
    A0A2H1ZEP1

  2. NM_001341498.1 → NP_001329314.1  VP1/ABI3-like 3 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B7B2

  3. NM_118275.4 → NP_193886.3  VP1/ABI3-like 3 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B7B8
Nucleotide Protein
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