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secE/sec61-gamma protein transport protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828594, updated on 18-Sep-2024

Summary

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Official Full Name
secE/sec61-gamma protein transport protein
Primary source
TAIR:AT4G24920
Locus tag
AT4G24920
See related
Araport:AT4G24920
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F13M23.60; F13M23_60
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Genomic context

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Location:
chromosome: 4
Exon count:
4
Sequence:
Chromosome: 4; NC_003075.7 (12819164..12820968, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene snurportin-1 protein Neighboring gene purple acid phosphatase 24 Neighboring gene coiled coil protein Neighboring gene glucuronoxylan 4-O-methyltransferase-like protein (DUF579) Neighboring gene thylakoid lumenal 17.9 kDa protein, chloroplast Neighboring gene SUMO-activating enzyme 1A

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001341719.1
NM_118624.4

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in cytosol HDA PubMed 
located_in intracellular anatomical structure ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
secE/sec61-gamma protein transport protein
NP_194222.1
  • secE/sec61-gamma protein transport protein; FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: intracellular protein transport, protein transport, protein targeting; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein translocase SEC61 complex gamma subunit (InterPro:IPR008158), Protein secE/sec61-gamma protein (InterPro:IPR001901); BEST Arabidopsis thaliana protein match is: secE/sec61-gamma protein transport protein (TAIR:AT5G50460.1); Has 578 Blast hits to 578 proteins in 210 species: Archae - 2; Bacteria - 0; Metazoa - 242; Fungi - 133; Plants - 109; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    12819164..12820968 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118624.4 → NP_194222.1  secE/sec61-gamma protein transport protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194222.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P0DI74, P0DI75, Q9SW34
    UniProtKB/TrEMBL
    A0A178UWJ6, A0A5S9XW96
    Conserved Domains (1) summary
    cl00481
    Location:7 → 68
    SecE; SecE/Sec61-gamma subunits of protein translocation complex

  2. NM_001341719.1 → NP_001329073.1  secE/sec61-gamma protein transport protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B6L2
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P0DI74.1
P0DI75.1

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases
Research Materials