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ATRBP45C RNA-binding (RRM/RBD/RNP motifs) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828808, updated on 18-Sep-2024

Summary

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Official Symbol
ATRBP45C
Official Full Name
RNA-binding (RRM/RBD/RNP motifs) family protein
Primary source
TAIR:AT4G27000
Locus tag
AT4G27000
See related
Araport:AT4G27000
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F10M23.340; F10M23_340
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Genomic context

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See ATRBP45C in Genome Data Viewer
Location:
chromosome: 4
Exon count:
7
Sequence:
Chromosome: 4; NC_003075.7 (13554604..13557915, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene aconitase 2 Neighboring gene RNI-like superfamily protein Neighboring gene polyadenylate-binding protein interacting protein Neighboring gene ribosome 60S biogenesis amino-terminal protein Neighboring gene inositol-1,4,5-trisphosphate 5-phosphatase Neighboring gene fatty acid desaturase A Neighboring gene EAP30/Vps36 family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. RBP45 and RBP47, two oligouridylate-specific hnRNP-like proteins interacting with poly(A)+ RNA in nuclei of plant cells. Lorković ZJ, et al. RNA, 2000 Nov. PMID 11105760, Free PMC Article
  2. Protein and metabolite composition of Arabidopsis stress granules. Kosmacz M, et al. New Phytol, 2019 May. PMID 30664249
  3. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article
  4. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
  5. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_118834.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mRNA binding HDA PubMed 
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables poly(A) binding ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic stress granule IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytosol HDA PubMed 
located_in nucleus ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding (RRM/RBD/RNP motifs) family protein
NP_567764.1
  • ATRBP45C; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein 45A (TAIR:AT5G54900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    13554604..13557915 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118834.4 → NP_567764.1  RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567764.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q93W34, Q9SZ39
    UniProtKB/TrEMBL
    A0A178UW18, A0A654FT99
    Conserved Domains (3) summary
    cd12344
    Location:81 → 158
    RRM1_SECp43_like; RNA recognition motif 1 (RRM1) found in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins
    cd12345
    Location:172 → 251
    RRM2_SECp43_like; RNA recognition motif 2 (RRM2) found in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins
    cl17169
    Location:277 → 348
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q93W34.1

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