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Integral membrane Yip1 family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829149, updated on 18-Sep-2024

Summary

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Official Full Name
Integral membrane Yip1 family protein
Primary source
TAIR:AT4G30260
Locus tag
AT4G30260
See related
Araport:AT4G30260
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F9N11.110; F9N11_110; YIP4b; YPT/RAB GTPase Interacting Protein 4b
Summary
Encodes one of the two YPT/RAB GTPase Interacting Protein 4a (YIP4a) and YIP4b (formerly YIP2), which form a TGN-localized complex with ECHIDNA (ECH). This complex is required for the secretion of cell wall polysaccharides.
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Genomic context

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Location:
chromosome: 4
Exon count:
4
Sequence:
Chromosome: 4; NC_003075.7 (14816575..14819084, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Syntaxin/t-SNARE family protein Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene xyloglucan endotransglucosylase/hydrolase 24 Neighboring gene xyloglucan endotransglucosylase/hydrolase 18

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Rho-of-plant activated root hair formation requires Arabidopsis YIP4a/b gene function. Gendre D, et al. Development, 2019 Mar 11. PMID 30770391, Free PMC Article
  2. Trans-Golgi network localized ECHIDNA/Ypt interacting protein complex is required for the secretion of cell wall polysaccharides in Arabidopsis. Gendre D, et al. Plant Cell, 2013 Jul. PMID 23832588, Free PMC Article
  3. Label-free protein quantification for plant Golgi protein localization and abundance. Nikolovski N, et al. Plant Physiol, 2014 Oct. PMID 25122472, Free PMC Article
  4. Identification of new intrinsic proteins in Arabidopsis plasma membrane proteome. Marmagne A, et al. Mol Cell Proteomics, 2004 Jul. PMID 15060130
  5. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Data indicate that YIP4a (AT2G18840)/YIP4b (At4g30260)/ECH (ECHIDNA; At1g09330) complex is required for cell wall polysaccharide secretion.
    Title: Trans-Golgi network localized ECHIDNA/Ypt interacting protein complex is required for the secretion of cell wall polysaccharides in Arabidopsis.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001342003.1
NM_001342004.1
NM_119172.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein homodimerization activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
  
involved_in pectin biosynthetic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in plant organ development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in plant-type cell wall cellulose biosynthetic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within polysaccharide transport IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in regulation of protein transport IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in root development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in root hair initiation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in unidimensional cell growth IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus HDA PubMed 
located_in endosome HDA PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plasma membrane HDA PubMed 
located_in trans-Golgi network HDA PubMed 
located_in trans-Golgi network IDA
Inferred from Direct Assay
more info
 PubMed 
located_in trans-Golgi network membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Integral membrane Yip1 family protein
NP_001320089.1
  • Integral membrane Yip1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: Yip1 domain (InterPro:IPR006977); BEST Arabidopsis thaliana protein match is: Integral membrane Yip1 family protein (TAIR:AT2G18840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    14816575..14819084 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001342003.1 → NP_001320089.1  Integral membrane Yip1 family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A178V3Z0, Q93VH1
    UniProtKB/TrEMBL
    A0A384KLW9
    Conserved Domains (1) summary
    cl21557
    Location:85 → 277
    Yip1; Yip1 domain

  2. NM_001342004.1 → NP_001328958.1  Integral membrane Yip1 family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9SUL8
    Conserved Domains (1) summary
    cl21557
    Location:160 → 352
    Yip1; Yip1 domain

  3. NM_119172.4 → NP_567843.1  Integral membrane Yip1 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567843.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A178V3Z0, Q93VH1
    UniProtKB/TrEMBL
    A0A384KLW9
    Conserved Domains (1) summary
    cl21557
    Location:85 → 277
    Yip1; Yip1 domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q93VH1.1

Gene LinkOut

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