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ASP5 aspartate aminotransferase 5 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829330, updated on 18-Sep-2024

Summary

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Official Symbol
ASP5
Official Full Name
aspartate aminotransferase 5
Primary source
TAIR:AT4G31990
Locus tag
AT4G31990
See related
Araport:AT4G31990
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AAT3; ASPARTATE AMINOTRANSFERASE; aspartate aminotransferase 5; ASPARTATE AMINOTRANSFERASE DEFICIENT 3; ATAAT1; F11C18.15
Summary
Encodes a plastid-localized aspartate aminotransferase. Does not display any PAT (glutamate/aspartate-prephenate aminotransferase) activity even in the presence of a high concentration of prephenate.
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Genomic context

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See ASP5 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
12
Sequence:
Chromosome: 4; NC_003075.7 (15470744..15473885, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene PPPDE thiol peptidase family protein Neighboring gene ncRNA Neighboring gene Ribosomal protein L39 family protein Neighboring gene Protein kinase superfamily protein Neighboring gene ncRNA Neighboring gene HSI2-like 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Isolation, characterisation and expression of a cDNA clone encoding plastid aspartate aminotransferase from Arabidopsis thaliana. Wilkie SE, et al. Plant Mol Biol, 1995 Mar. PMID 7766905
  2. Identification of a plant gene encoding glutamate/aspartate-prephenate aminotransferase: the last homeless enzyme of aromatic amino acids biosynthesis. Graindorge M, et al. FEBS Lett, 2010 Oct 22. PMID 20883697
  3. Recombinant expression, purification, and characterization of three isoenzymes of aspartate aminotransferase from Arabidopsis thaliana. Wilkie SE, et al. Protein Expr Purif, 1998 Apr. PMID 9535706
  4. Identification and molecular properties of SUMO-binding proteins in Arabidopsis. Park HC, et al. Mol Cells, 2011 Aug. PMID 21607647, Free PMC Article
  5. The chloroplast lumen and stromal proteomes of Arabidopsis thaliana show differential sensitivity to short- and long-term exposure to low temperature. Goulas E, et al. Plant J, 2006 Sep. PMID 16923014

See all (19) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001036690.1
NM_001203956.1
NM_119351.3
NM_179152.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables L-aspartate:2-oxoglutarate aminotransferase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables L-aspartate:2-oxoglutarate aminotransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables L-aspartate:2-oxoglutarate aminotransferase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
NOT enables aspartate-prephenate aminotransferase activity IDA
Inferred from Direct Assay
more info
 PubMed 
NOT enables glutamate-prephenate aminotransferase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in 2-oxoglutarate metabolic process ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in amino acid metabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in aspartate metabolic process ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
involved_in glutamate metabolic process ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within response to cold IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast HDA PubMed 
located_in chloroplast HDA PubMed 
located_in chloroplast IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast envelope HDA PubMed 
located_in chloroplast stroma HDA PubMed 
NOT located_in cytosol RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
located_in plasma membrane HDA PubMed 
located_in plastid IDA
Inferred from Direct Assay
more info
 PubMed 
located_in stromule IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
aspartate aminotransferase 5
NP_001031767.1
  • aspartate aminotransferase 5 (ASP5); FUNCTIONS IN: L-aspartate:2-oxoglutarate aminotransferase activity; INVOLVED IN: response to cadmium ion, response to cold; LOCATED IN: apoplast, stromule, chloroplast, plastid; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Aspartate/other aminotransferase (InterPro:IPR000796), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: aspartate aminotransferase 3 (TAIR:AT5G11520.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_001190885.1
  • aspartate aminotransferase 5 (ASP5); CONTAINS InterPro DOMAIN/s: Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Aspartate/other aminotransferase (InterPro:IPR000796), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: aspartate aminotransferase 3 (TAIR:AT5G11520.1).
NP_194927.1
  • aspartate aminotransferase 5 (ASP5); FUNCTIONS IN: L-aspartate:2-oxoglutarate aminotransferase activity; INVOLVED IN: response to cadmium ion, response to cold; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Aspartate/other aminotransferase (InterPro:IPR000796), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: aspartate aminotransferase 3 (TAIR:AT5G11520.1); Has 5538 Blast hits to 5532 proteins in 1319 species: Archae - 6; Bacteria - 3683; Metazoa - 482; Fungi - 406; Plants - 379; Viruses - 0; Other Eukaryotes - 582 (source: NCBI BLink).
NP_849483.1
  • aspartate aminotransferase 5 (ASP5); FUNCTIONS IN: L-aspartate:2-oxoglutarate aminotransferase activity; INVOLVED IN: response to cadmium ion, response to cold; LOCATED IN: apoplast, stromule, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class I/classII (InterPro:IPR004839), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Aspartate/other aminotransferase (InterPro:IPR000796), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: aspartate aminotransferase 3 (TAIR:AT5G11520.1); Has 5538 Blast hits to 5532 proteins in 1319 species: Archae - 6; Bacteria - 3683; Metazoa - 482; Fungi - 406; Plants - 379; Viruses - 0; Other Eukaryotes - 582 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    15470744..15473885 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_179152.3 → NP_849483.1  aspartate aminotransferase 5 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849483.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O49392, P46248, Q8LGE6
    UniProtKB/TrEMBL
    A0A178V5X1, A0A384KDZ4, A0A5S9XXS5, B9DGA8
    Conserved Domains (1) summary
    PLN02397
    Location:30 → 453
    PLN02397; aspartate transaminase

  2. NM_001203956.1 → NP_001190885.1  aspartate aminotransferase 5 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190885.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XXS5, F4JTH0
    Conserved Domains (2) summary
    PLN02397
    Location:30 → 448
    PLN02397; aspartate transaminase
    pfam00155
    Location:74 → 440
    Aminotran_1_2; Aminotransferase class I and II

  3. NM_001036690.1 → NP_001031767.1  aspartate aminotransferase 5 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031767.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XXS5, B9DG21
    Conserved Domains (2) summary
    PLN02397
    Location:30 → 452
    PLN02397; aspartate transaminase
    pfam00155
    Location:79 → 445
    Aminotran_1_2; Aminotransferase class I and II

  4. NM_119351.3 → NP_194927.1  aspartate aminotransferase 5 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194927.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O49392, P46248, Q8LGE6
    UniProtKB/TrEMBL
    A0A178V5X1, A0A384KDZ4, A0A5S9XXS5, B9DGA8
    Conserved Domains (1) summary
    PLN02397
    Location:30 → 453
    PLN02397; aspartate transaminase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P46248.2

Gene LinkOut

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