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BN54_RS08985 YfbR-like 5'-deoxynucleotidase [ Limosilactobacillus ingluviei str. Autruche 4 ]

Gene ID: 82934583, updated on 23-Jul-2024

Summary

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Gene symbol
BN54_RS08985
Gene description
YfbR-like 5'-deoxynucleotidase
Locus tag
BN54_RS08985
Gene type
protein coding
Organism
Limosilactobacillus ingluviei str. Autruche 4 (strain: Autruche 4)
Lineage
Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Limosilactobacillus
Old locus tag
BN54_09325
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Genomic context

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NZ_HE997177.1Genomic Context describing neighboring genes Neighboring gene ABC transporter ATP-binding protein Neighboring gene hypothetical protein Neighboring gene phospho-sugar mutase Neighboring gene HAD-IIB family hydrolase

Genomic regions, transcripts, and products

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Genomic Sequence:
NZ_HE997177.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The deoxycytidine pathway for thymidylate synthesis in Escherichia coli. Weiss B. J Bacteriol, 2007 Nov. PMID 17827303, Free PMC Article
  2. Structural insight into the mechanism of substrate specificity and catalytic activity of an HD-domain phosphohydrolase: the 5'-deoxyribonucleotidase YfbR from Escherichia coli. Zimmerman MD, et al. J Mol Biol, 2008 Apr 18. PMID 18353368, Free PMC Article
  3. A widespread pathway for substitution of adenine by diaminopurine in phage genomes. Zhou Y, et al. Science, 2021 Apr 30. PMID 33926954
  4. Enzyme genomics: Application of general enzymatic screens to discover new enzymes. Kuznetsova E, et al. FEMS Microbiol Rev, 2005 Apr. PMID 15808744
  5. General enzymatic screens identify three new nucleotidases in Escherichia coli. Biochemical characterization of SurE, YfbR, and YjjG. Proudfoot M, et al. J Biol Chem, 2004 Dec 24. PMID 15489502

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
YfbR-like 5'-deoxynucleotidase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NZ_HE997177.1 Reference assembly

    Range
    47505..48140 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_019206866.1 YfbR-like 5'-deoxynucleotidase [Limosilactobacillus ingluviei]

    Conserved Domains (1) summary
    cl21469
    Location:1 → 211
    HDc; Metal dependent phosphohydrolases with conserved 'HD' motif