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AT4G32460 choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829381, updated on 20-Nov-2023

Summary

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Gene symbol
AT4G32460
Gene description
choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642)
Primary source
Araport:AT4G32460
Locus tag
AT4G32460
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F8B4.160; F8B4_160
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Genomic context

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Location:
chromosome: 4
Exon count:
5
Sequence:
Chromosome: 4; NC_003075.7 (15662266..15665032, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Plant Tudor-like RNA-binding protein Neighboring gene miscRNA Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene Cytochrome bd ubiquinol oxidase, 14kDa subunit Neighboring gene tRNA-Gly

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. BIIDXI, a DUF642 Cell Wall Protein That Regulates Pectin Methyl Esterase Activity, Is Involved in Thermotolerance Processes in Arabidopsis thaliana. Pineda-Hernández E, et al. Plants (Basel), 2022 Nov 11. PMID 36432778, Free PMC Article
  2. BIIDXI, a DUF642 cell wall protein, is involved in hypocotyl growth via auxin efflux. Salazar-Iribe A, et al. J Plant Physiol, 2018 Dec. PMID 30253266
  3. Degree of pectin methyl esterification in endosperm cell walls is involved in embryo bending in Arabidopsis thaliana. Cruz-Valderrama JE, et al. Biochem Biophys Res Commun, 2018 Jan 1. PMID 29137987
  4. BIIDXI, the At4g32460 DUF642 gene, is involved in pectin methyl esterase regulation during Arabidopsis thaliana seed germination and plant development. Zúñiga-Sánchez E, et al. BMC Plant Biol, 2014 Dec 2. PMID 25442819, Free PMC Article
  5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. involved in hypocotyl elongation through the regulation of auxin flux. [BIIDXI]
    Title: BIIDXI, a DUF642 cell wall protein, is involved in hypocotyl growth via auxin efflux.
  2. Transgenic lines overexpressing the DUF642 proteins encoded by At4g32460 and At5g11420 showed increased pectin methyl esterase 3 activity during seed germination, and improved seed germination performance.
    Title: BIIDXI, the At4g32460 DUF642 gene, is involved in pectin methyl esterase regulation during Arabidopsis thaliana seed germination and plant development.
Submit: New GeneRIF Correction

General gene information

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Homology

NM_001342152.1
NM_001342153.1
NM_119398.4
NM_202932.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables enzyme regulator activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within embryo development ending in seed dormancy IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in embryonic morphogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within pectin biosynthetic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in positive regulation of seed germination IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of cell wall pectin metabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in reproductive structure development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in response to auxin IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in response to gibberellin IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in response to nematode IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
located_in plant-type cell wall IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642)
NP_567894.1
  • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF642 (InterPro:IPR006946), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF642 (TAIR:AT5G11420.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_974661.1
  • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF642 (InterPro:IPR006946), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF642 (TAIR:AT5G11420.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    15662266..15665032 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_202932.1 → NP_974661.1  choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974661.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WWU1, Q8LAR0, Q9SUU6
    UniProtKB/TrEMBL
    A0A178V5J0, A0A5S9XXY2
    Conserved Domains (1) summary
    PLN03089
    Location:1 → 365
    PLN03089; hypothetical protein; Provisional

  2. NM_119398.4 → NP_567894.1  choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567894.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WWU1, Q8LAR0, Q9SUU6
    UniProtKB/TrEMBL
    A0A178V5J0, A0A5S9XXY2
    Conserved Domains (1) summary
    PLN03089
    Location:1 → 365
    PLN03089; hypothetical protein; Provisional

  3. NM_001342152.1 → NP_001329630.1  choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XXY2, A0A7G2F2P3
    Conserved Domains (1) summary
    PLN03089
    Location:1 → 325
    PLN03089; hypothetical protein; Provisional

  4. NM_001342153.1 → NP_001329631.1  choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XXY2, A0A7G2F2P3
    Conserved Domains (1) summary
    PLN03089
    Location:1 → 325
    PLN03089; hypothetical protein; Provisional
Nucleotide Protein
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