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CAD9 cinnamyl alcohol dehydrogenase 9 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830088, updated on 18-Sep-2024

Summary

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Official Symbol
CAD9
Official Full Name
cinnamyl alcohol dehydrogenase 9
Primary source
TAIR:AT4G39330
Locus tag
AT4G39330
See related
Araport:AT4G39330
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATCAD9; cinnamyl alcohol dehydrogenase 9; T22F8.230; T22F8_230
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Genomic context

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See CAD9 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
5
Sequence:
Chromosome: 4; NC_003075.7 (18291218..18293018)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene envelope glycoprotein Neighboring gene microtubule-associated protein-like protein Neighboring gene Egg cell-secreted-like protein (DUF1278) Neighboring gene tRNA-His

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evidence for a role of AtCAD 1 in lignification of elongating stems of Arabidopsis thaliana. Eudes A, et al. Planta, 2006 Dec. PMID 16832689
  2. Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study. Bindschedler LV, et al. Phytochemistry, 2008 Jul. PMID 18538804
  3. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Klopffleisch K, et al. Mol Syst Biol, 2011 Sep 27. PMID 21952135, Free PMC Article
  4. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
  5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001036735.2
NM_120093.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables cinnamyl-alcohol dehydrogenase activity IEA
Inferred from Electronic Annotation
more info
  
enables cinnamyl-alcohol dehydrogenase activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in lignin biosynthetic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast HDA PubMed 
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in cytosol HDA PubMed 
located_in plasma membrane HDA PubMed 

General protein information

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Preferred Names
cinnamyl alcohol dehydrogenase 9
NP_001031812.1
  • cinnamyl alcohol dehydrogenase 9 (CAD9); FUNCTIONS IN: oxidoreductase activity, zinc ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: apoplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: cinnamyl alcohol dehydrogenase homolog 3 (TAIR:AT2G21890.1); Has 37105 Blast hits to 37091 proteins in 3040 species: Archae - 773; Bacteria - 24856; Metazoa - 1252; Fungi - 2806; Plants - 2933; Viruses - 3; Other Eukaryotes - 4482 (source: NCBI BLink).
NP_195643.1
  • cinnamyl alcohol dehydrogenase 9 (CAD9); FUNCTIONS IN: oxidoreductase activity, zinc ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: apoplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Polyketide synthase, enoylreductase (InterPro:IPR020843), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: cinnamyl alcohol dehydrogenase homolog 2 (TAIR:AT2G21730.1); Has 37642 Blast hits to 37626 proteins in 3053 species: Archae - 776; Bacteria - 25052; Metazoa - 1249; Fungi - 2827; Plants - 2984; Viruses - 3; Other Eukaryotes - 4751 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    18291218..18293018
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_120093.5 → NP_195643.1  cinnamyl alcohol dehydrogenase 9 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_195643.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B9DHS7, C0Z2D3, P42734, Q8LB84, Q94K02
    UniProtKB/TrEMBL
    A0A178V326, A0A5S9Y0P1
    Conserved Domains (1) summary
    PLN02586
    Location:1 → 360
    PLN02586; probable cinnamyl alcohol dehydrogenase

  2. NM_001036735.2 → NP_001031812.1  cinnamyl alcohol dehydrogenase 9 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031812.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P42734
    Conserved Domains (1) summary
    cd05283
    Location:14 → 303
    CAD1; Cinnamyl alcohol dehydrogenases (CAD)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P42734.2

Gene LinkOut

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