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Histone superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830165, updated on 18-Sep-2024

Summary

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Official Full Name
Histone superfamily protein
Primary source
TAIR:AT4G40040
Locus tag
AT4G40040
See related
Araport:AT4G40040
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
H3.3; histone 3.3; T5J17.210
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Genomic context

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Location:
chromosome: 4
Exon count:
5
Sequence:
Chromosome: 4; NC_003075.7 (18557149..18558945, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Myosin heavy chain-related protein Neighboring gene Histone superfamily protein Neighboring gene Microsomal signal peptidase 12 kDa subunit (SPC12) Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The histone variant H3.3 promotes the active chromatin state to repress flowering in Arabidopsis. Zhao F, et al. Plant Physiol, 2021 Aug 3. PMID 34618105, Free PMC Article
  2. Arabidopsis replacement histone variant H3.3 occupies promoters of regulated genes. Shu H, et al. Genome Biol, 2014 Mar 21. PMID 24708891, Free PMC Article
  3. Disruption of NAP1 genes in Arabidopsis thaliana suppresses the fas1 mutant phenotype, enhances genome stability and changes chromatin compaction. Kolářová K, et al. Plant J, 2021 Apr. PMID 33368779
  4. Arabidopsis thaliana AHL family modulates hypocotyl growth redundantly by interacting with each other via the PPC/DUF296 domain. Zhao J, et al. Proc Natl Acad Sci U S A, 2013 Nov 26. PMID 24218605, Free PMC Article
  5. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The histone variant H3.3 promotes the active chromatin state to repress flowering in Arabidopsis.
    Title: The histone variant H3.3 promotes the active chromatin state to repress flowering in Arabidopsis.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001036739.1
NM_179198.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables euchromatin binding IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in euchromatin IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plasma membrane HDA PubMed 

General protein information

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Preferred Names
Histone superfamily protein
NP_001031816.1
  • Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT4G40030.2); Has 14600 Blast hits to 14592 proteins in 7243 species: Archae - 0; Bacteria - 0; Metazoa - 10603; Fungi - 2037; Plants - 1258; Viruses - 0; Other Eukaryotes - 702 (source: NCBI BLink).
NP_849529.1
  • Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT4G40030.2); Has 14600 Blast hits to 14592 proteins in 7243 species: Archae - 0; Bacteria - 0; Metazoa - 10603; Fungi - 2037; Plants - 1258; Viruses - 0; Other Eukaryotes - 702 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    18557149..18558945 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001342565.1 → NP_001329167.1  Histone superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P59169, Q6NR95
    UniProtKB/TrEMBL
    A0A178UM09, A0A384KRT1, A0A5S9WUL8, A0A654EQW3, B9DGR9
    Conserved Domains (1) summary
    PTZ00018
    Location:1 → 136
    PTZ00018; histone H3; Provisional

  2. NM_179198.2 → NP_849529.1  Histone superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849529.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P59169, Q6NR95
    UniProtKB/TrEMBL
    A0A178UM09, A0A384KRT1, A0A5S9WUL8, A0A654EQW3, B9DGR9
    Conserved Domains (1) summary
    PTZ00018
    Location:1 → 136
    PTZ00018; histone H3; Provisional

  3. NM_001036739.1 → NP_001031816.1  Histone superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031816.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P59169, Q6NR95
    UniProtKB/TrEMBL
    A0A178UM09, A0A384KRT1, A0A5S9WUL8, A0A654EQW3, B9DGR9
    Conserved Domains (1) summary
    PTZ00018
    Location:1 → 136
    PTZ00018; histone H3; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P59169.2

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases
Research Materials