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TBL9 TRICHOME BIREFRINGENCE-LIKE 9 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830510, updated on 18-Sep-2024

Summary

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Official Symbol
TBL9
Official Full Name
TRICHOME BIREFRINGENCE-LIKE 9
Primary source
TAIR:AT5G06230
Locus tag
AT5G06230
See related
Araport:AT5G06230
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MBL20.11; MBL20_11; TRICHOME BIREFRINGENCE-LIKE 9
Summary
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
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Genomic context

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See TBL9 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
5
Sequence:
Chromosome: 5; NC_003076.8 (1884928..1887175, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Uncharacterized protein family (UPF0497) Neighboring gene RNA binding (RRM/RBD/RNP motifs) family protein Neighboring gene LETM1-like protein Neighboring gene embryo defective 2735 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001342861.1
NM_120705.3
NM_203010.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables O-acetyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
TRICHOME BIREFRINGENCE-LIKE 9
NP_568164.2
  • TRICHOME BIREFRINGENCE-LIKE 9 (TBL9); LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 8 (TAIR:AT3G11570.1); Has 1361 Blast hits to 1339 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 1354; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
NP_974739.1
  • TRICHOME BIREFRINGENCE-LIKE 9; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 8 (TAIR:AT3G11570.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    1884928..1887175 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_120705.3 → NP_568164.2  TRICHOME BIREFRINGENCE-LIKE 9 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568164.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9ASZ0, Q9FFZ4
    UniProtKB/TrEMBL
    A0A178UJA4, A0A5S9Y1U7, A0A7G2F8R1
    Conserved Domains (2) summary
    pfam13839
    Location:120 → 404
    PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
    pfam14416
    Location:60 → 119
    PMR5N; PMR5 N terminal Domain

  2. NM_203010.1 → NP_974739.1  TRICHOME BIREFRINGENCE-LIKE 9 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974739.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FFZ4
    Conserved Domains (2) summary
    pfam13839
    Location:79 → 363
    PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
    pfam14416
    Location:19 → 78
    PMR5N; PMR5 N terminal Domain

  3. NM_001342861.1 → NP_001331517.1  TRICHOME BIREFRINGENCE-LIKE 9 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BE49
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FFZ4.1

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