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LAC13 laccase 13 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830604, updated on 18-Sep-2024

Summary

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Official Symbol
LAC13
Official Full Name
laccase 13
Primary source
TAIR:AT5G07130
Locus tag
AT5G07130
See related
Araport:AT5G07130
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
laccase 13; T28J14.70; T28J14_70
Summary
putative laccase, a member of laccase family of genes (17 members in Arabidopsis).
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Genomic context

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See LAC13 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
5
Sequence:
Chromosome: 5; NC_003076.8 (2209717..2212665)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene prenylated RAB acceptor 1.B6 Neighboring gene ncRNA Neighboring gene sorting nexin 2B Neighboring gene ncRNA Neighboring gene tRNA-Gly Neighboring gene Protein kinase superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. High-order mutants reveal an essential requirement for peroxidases but not laccases in Casparian strip lignification. Rojas-Murcia N, et al. Proc Natl Acad Sci U S A, 2020 Nov 17. PMID 33139576, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

NM_120795.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
  
enables hydroquinone:oxygen oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in Casparian strip IDA
Inferred from Direct Assay
more info
 PubMed 
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
laccase 13
NP_196330.3
  • laccase 13 (LAC13); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 3 (TAIR:AT2G30210.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    2209717..2212665
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001342922.1 → NP_001330377.1  laccase 13 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BAN2
    Conserved Domains (1) summary
    TIGR03389
    Location:2 → 484
    laccase; plant

  2. NM_001342923.1 → NP_001330376.1  laccase 13 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BAN2
    Conserved Domains (1) summary
    TIGR03389
    Location:2 → 484
    laccase; plant

  3. NM_120795.5 → NP_196330.3  laccase 13 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196330.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LYQ2
    UniProtKB/TrEMBL
    A0A178URY6, A0A5S9Y241, A0A7G2F7R6
    Conserved Domains (1) summary
    TIGR03389
    Location:21 → 569
    laccase; plant
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LYQ2.1

Gene LinkOut

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