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START (StAR-related lipid-transfer) lipid-binding domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830617, updated on 18-Sep-2024

Summary

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Official Full Name
START (StAR-related lipid-transfer) lipid-binding domain-containing protein
Primary source
TAIR:AT5G07260
Locus tag
AT5G07260
See related
Araport:AT5G07260
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T28J14.200; T28J14_200
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Genomic context

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Location:
chromosome: 5
Exon count:
7
Sequence:
Chromosome: 5; NC_003076.8 (2277813..2280281)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene IQ-domain 24 Neighboring gene RHOMBOID-like protein 3 Neighboring gene uncharacterized protein Neighboring gene Leucine-rich repeat transmembrane protein kinase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001203319.1
NM_120808.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables lipid binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
START (StAR-related lipid-transfer) lipid-binding domain-containing protein
NP_001190248.1
  • START (StAR-related lipid-transfer) lipid-binding domain; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: START (StAR-related lipid-transfer) lipid-binding domain (TAIR:AT4G26920.1).
NP_196343.2
  • START (StAR-related lipid-transfer) lipid-binding domain; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: START (StAR-related lipid-transfer) lipid-binding domain (TAIR:AT4G26920.1); Has 440 Blast hits to 414 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 440; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    2277813..2280281
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001203319.1 → NP_001190248.1  START (StAR-related lipid-transfer) lipid-binding domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190248.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9Y4C7, F4K6M0
    Conserved Domains (1) summary
    cl14643
    Location:99 → 296
    SRPBCC; START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily

  2. NM_120808.3 → NP_196343.2  START (StAR-related lipid-transfer) lipid-binding domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196343.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9Y4C7, A0A654FZI2, Q84JD1
    Conserved Domains (1) summary
    cl14643
    Location:99 → 296
    SRPBCC; START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily
Nucleotide Protein
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