U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

UBQ, helicase-c and DEAD-like helicase domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830705, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
UBQ, helicase-c and DEAD-like helicase domain-containing protein
Primary source
TAIR:AT5G08110
Locus tag
AT5G08110
See related
Araport:AT5G08110
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T22D6.50; T22D6_50
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 5
Exon count:
20
Sequence:
Chromosome: 5; NC_003076.8 (2594716..2600192, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein Neighboring gene movement protein binding protein 2C Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The RecQ-like helicase HRQ1 is involved in DNA crosslink repair in Arabidopsis in a common pathway with the Fanconi anemia-associated nuclease FAN1 and the postreplicative repair ATPase RAD5A. Röhrig S, et al. New Phytol, 2018 Jun. PMID 29577315
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. AtHRQ1 is epistatic to the ATPase RAD5A for intra- as well as interstrand crosslinking repair.[AtHRQ1]
    Title: The RecQ-like helicase HRQ1 is involved in DNA crosslink repair in Arabidopsis in a common pathway with the Fanconi anemia-associated nuclease FAN1 and the postreplicative repair ATPase RAD5A.
Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help
NM_120893.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within interstrand cross-link repair IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
UBQ, helicase-c and DEAD-like helicase domain-containing protein
NP_196428.2
  • nucleic acid binding;ATP-dependent helicases;ATP binding;helicases;ATP-dependent helicases; FUNCTIONS IN: helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), Ubiquitin supergroup (InterPro:IPR019955), Protein of unknown function DUF1998 (InterPro:IPR018973), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G40700.1); Has 14986 Blast hits to 14312 proteins in 2354 species: Archae - 833; Bacteria - 9982; Metazoa - 976; Fungi - 914; Plants - 633; Viruses - 5; Other Eukaryotes - 1643 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    2594716..2600192 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001342980.1 → NP_001330594.1  UBQ, helicase-c and DEAD-like helicase domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BBB3, A0A654FZB2

  2. NM_001342981.1 → NP_001330595.1  UBQ, helicase-c and DEAD-like helicase domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178U9T1, A0A1P8BBA5, A0A5S9Y2F4

  3. NM_120893.3 → NP_196428.2  UBQ, helicase-c and DEAD-like helicase domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196428.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654FZB2, F4K9K8
    Conserved Domains (5) summary
    cd00196
    Location:17 → 85
    UBQ; Ubiquitin-like proteins
    TIGR03817
    Location:358 → 1138
    DECH_helic; helicase/secretion neighborhood putative DEAH-box helicase
    pfam00270
    Location:395 → 528
    DEAD; DEAD/DEAH box helicase
    pfam00271
    Location:655 → 754
    Helicase_C; Helicase conserved C-terminal domain
    pfam09369
    Location:1027 → 1110
    DUF1998; Domain of unknown function (DUF1998)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.