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Pectate lyase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831363, updated on 18-Sep-2024

Summary

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Official Full Name
Pectate lyase family protein
Primary source
TAIR:AT5G15110
Locus tag
AT5G15110
See related
Araport:AT5G15110
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F2G14.230; F2G14_230
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Genomic context

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Location:
chromosome: 5
Exon count:
4
Sequence:
Chromosome: 5; NC_003076.8 (4895750..4897966)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene voltage dependent anion channel 3 Neighboring gene Auxin efflux carrier family protein Neighboring gene 2-aminoethanethiol dioxygenase, putative (DUF1637) Neighboring gene WRKY DNA-binding protein 72

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_121515.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables lyase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Pectate lyase family protein
NP_197015.4
  • Pectate lyase family protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectate lyase, N-terminal (InterPro:IPR007524), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectate lyase family protein (TAIR:AT3G01270.1); Has 1602 Blast hits to 1594 proteins in 273 species: Archae - 0; Bacteria - 694; Metazoa - 0; Fungi - 171; Plants - 721; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    4895750..4897966
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121515.6 → NP_197015.4  Pectate lyase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197015.4

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0MFG0, Q9LFP5
    UniProtKB/TrEMBL
    A0A178UDH1
    Conserved Domains (2) summary
    smart00656
    Location:196 → 391
    Amb_all; Amb_all domain
    pfam04431
    Location:26 → 103
    Pec_lyase_N; Pectate lyase, N terminus
Nucleotide Protein
Heading Accession and Version

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