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2-aminoethanethiol dioxygenase, putative (DUF1637) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831364, updated on 18-Sep-2024

Summary

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Official Full Name
2-aminoethanethiol dioxygenase, putative (DUF1637)
Primary source
TAIR:AT5G15120
Locus tag
AT5G15120
See related
Araport:AT5G15120
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F2G14.1; PCO1; plant cysteine oxidase 1
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Genomic context

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Location:
chromosome: 5
Exon count:
5
Sequence:
Chromosome: 5; NC_003076.8 (4898641..4900734)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Auxin efflux carrier family protein Neighboring gene Pectate lyase family protein Neighboring gene WRKY DNA-binding protein 72 Neighboring gene Galactose mutarotase-like superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Plant cysteine oxidases control the oxygen-dependent branch of the N-end-rule pathway. Weits DA, et al. Nat Commun, 2014 Mar 6. PMID 24599061, Free PMC Article
  2. Plant cysteine oxidases are dioxygenases that directly enable arginyl transferase-catalysed arginylation of N-end rule targets. White MD, et al. Nat Commun, 2017 Mar 23. PMID 28332493, Free PMC Article
  3. Molecular basis for cysteine oxidation by plant cysteine oxidases from Arabidopsis thaliana. Chen Z, et al. J Struct Biol, 2021 Mar. PMID 33207269
  4. Cross-kingdom comparison of transcriptomic adjustments to low-oxygen stress highlights conserved and plant-specific responses. Mustroph A, et al. Plant Physiol, 2010 Mar. PMID 20097791, Free PMC Article
  5. Integrative Analysis from the Epigenome to Translatome Uncovers Patterns of Dominant Nuclear Regulation during Transient Stress. Lee TA, et al. Plant Cell, 2019 Nov. PMID 31519798, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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NM_121516.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables cysteine dioxygenase activity IEA
Inferred from Electronic Annotation
more info
  
enables iron ion binding ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within anaerobic respiration IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within anaerobic respiration IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within cellular response to hypoxia HEP PubMed 
acts_upstream_of_or_within detection of hypoxia IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within peptidyl-cysteine oxidation IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within response to hypoxia IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
2-aminoethanethiol dioxygenase, putative (DUF1637)
NP_197016.1
  • Protein of unknown function (DUF1637); FUNCTIONS IN: cysteamine dioxygenase activity; INVOLVED IN: anaerobic respiration; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1637 (InterPro:IPR012864); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1637) (TAIR:AT5G39890.1); Has 363 Blast hits to 363 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 103; Fungi - 0; Plants - 225; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    4898641..4900734
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121516.4 → NP_197016.1  2-aminoethanethiol dioxygenase, putative (DUF1637) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197016.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LXG9
    UniProtKB/TrEMBL
    A0A178UQY6
    Conserved Domains (1) summary
    pfam07847
    Location:89 → 291
    PCO_ADO
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LXG9.1

Gene LinkOut

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